Merge branch 'main' into license

.devcontainer/Dockerfile

@@ -1 +1 @@
-FROM pangeo/base-image:2024.02.02
+FROM pangeo/base-image:2024.06.02

.devcontainer/scipy2024/devcontainer.json

@@ -0,0 +1,21 @@
+{
+  "build": {
+    "dockerfile": "../Dockerfile",
+    "context": "../../conda"
+  },
+  "postCreateCommand": {
+    "jupyterlab": "mkdir /home/jovyan/.jupyter && cp ${containerWorkspaceFolder}/.devcontainer/scipy2024/jupyter_lab_config.py /home/jovyan/.jupyter/jupyter_lab_config.py",
+    "vscode": "mkdir ${containerWorkspaceFolder}/.vscode && cp ${containerWorkspaceFolder}/.devcontainer/scipy2024/tasks.json ${containerWorkspaceFolder}/.vscode/tasks.json"
+  },
+  "hostRequirements": {
+    "cpus": 2
+  },
+  "customizations": {
+    "codespaces": {
+      "openFiles": ["workshops/scipy2024/README.md"]
+    },
+    "vscode": {
+      "extensions": ["ms-toolsai.jupyter", "ms-python.python"]
+    }
+  }
+}

.devcontainer/scipy2024/jupyter_lab_config.py

@@ -0,0 +1,15 @@
+# Configuration file for lab.
+
+c = get_config()  # noqa
+
+## The default URL to redirect to from `/`
+#  Default: '/lab'
+c.LabApp.default_url = '/lab/tree/workshops/scipy2024/index.ipynb'
+
+## Set the Access-Control-Allow-Origin header
+#
+#          Use '*' to allow any origin to access your server.
+#
+#          Takes precedence over allow_origin_pat.
+#  Default: ''
+c.ServerApp.allow_origin = '*'

.devcontainer/scipy2024/tasks.json

@@ -0,0 +1,16 @@
+{
+  "version": "2.0.0",
+  "tasks": [
+    {
+      "label": "jupyterlab",
+      "type": "shell",
+      "command": "/srv/conda/envs/notebook/bin/jupyter lab --no-browser",
+      "presentation": {
+        "reveal": "always"
+      },
+      "runOptions": {
+        "runOn": "folderOpen"
+      }
+    }
+  ]
+}

.github/dependabot.yml

@@ -1,6 +1,10 @@
 version: 2
 updates:
-  - package-ecosystem: 'docker'
-    directory: '/.devcontainer'
+  - package-ecosystem: "docker"
+    directory: "/.devcontainer"
     schedule:
-      interval: 'daily'
+      interval: "daily"
+  - package-ecosystem: "github-actions"
+    directory: "/.github"
+    schedule:
+      interval: "monthly"

.github/workflows/qaqc.yaml

@@ -33,7 +33,7 @@ jobs:
         with:
           check_filenames: true
           check_hidden: true
-          skip: '.git,*.js,qaqc.yml'
+          skip: ".git,*.js,qaqc.yml"
           ignore_words_list: hist,nd
 
       # borrowed from https://github.com/ProjectPythia/pythia-foundations/blob/main/.github/workflows/link-checker.yaml

.pre-commit-config.yaml

@@ -3,17 +3,18 @@ ci:
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v4.6.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
       - id: check-docstring-first
       - id: check-json
+        exclude: ^.devcontainer/
       - id: check-yaml
       - id: double-quote-string-fixer
 
   - repo: https://github.com/psf/black
-    rev: 23.10.1
+    rev: 24.4.2
     hooks:
       - id: black
       - id: black-jupyter
@@ -24,22 +25,22 @@ repos:
       - id: blackdoc
 
   - repo: https://github.com/PyCQA/flake8
-    rev: 6.1.0
+    rev: 7.0.0
     hooks:
       - id: flake8
 
   - repo: https://github.com/PyCQA/isort
-    rev: 5.12.0
+    rev: 5.13.2
     hooks:
       - id: isort
 
   - repo: https://github.com/pre-commit/mirrors-prettier
-    rev: v3.0.3
+    rev: v4.0.0-alpha.8
     hooks:
       - id: prettier
 
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.6.1
+    rev: 0.7.1
     hooks:
       - id: nbstripout
         args: [--extra-keys=metadata.kernelspec metadata.language_info.version]

.prettierignore

@@ -1,2 +1 @@
-*lock.yml
-conda/
+conda/**

_config.yml

@@ -1,5 +1,5 @@
 # Learn more at https://jupyterbook.org/customize/config.html
-title: ''
+title: ""
 author: The Xarray Community
 copyright: '2024'
 logo: images/logo.png
@@ -35,7 +35,7 @@ parse:
 # Force re-execution of notebooks on each build.
 # See https://jupyterbook.org/content/execute.html
 execute:
-  execute_notebooks: 'cache'
+  execute_notebooks: "cache"
   allow_errors: false
   # Per-cell notebook execution limit (seconds)
   timeout: 300
@@ -48,11 +48,11 @@ latex:
 # Configure your Binder links, such as the URL of the BinderHub.
 launch_buttons:
   notebook_interface: jupyterlab
-  binderhub_url: 'https://mybinder.org'
+  binderhub_url: "https://mybinder.org"
 
 # Information about where the book exists on the web
 repository:
-  url: 'https://github.com/xarray-contrib/xarray-tutorial'
+  url: "https://github.com/xarray-contrib/xarray-tutorial"
   branch: main
 
 # Bibliography
@@ -71,7 +71,7 @@ sphinx:
   config:
     language: en # accessibility
     # application/vnd.holoviews_load.v0+json, application/vnd.holoviews_exec.v0+json
-    suppress_warnings: ['mystnb.unknown_mime_type', 'misc.highlighting_failure']
+    suppress_warnings: ["mystnb.unknown_mime_type", "misc.highlighting_failure"]
     notfound_context:
       body: "<h1>Whoops! 404 Page Not Found</h1>\n\n<p>Sorry, this page doesn't exist. Many sections of this book have been updated recently.</p><p> Try the search box 🔎 to find what you're looking for!</p>"
     notfound_urls_prefix: /

advanced/accessors/01_accessor_examples.ipynb

@@ -117,7 +117,7 @@
     "\n",
     "Perhaps you find yourself running similar code for multiple xarray objects or across related projects. By packing your code into an extension, it makes it easy to repeat the same operation while reducing the likelihood of [human introduced] errors.\n",
     "\n",
-    "Here we wrap the reorganization of InSAR ice velocity data illustrated in [this tutorial](https://tutorial.xarray.dev/data_cleaning/ice_velocity.html?highlight=ice_velocity) into a custom Xarray extension that makes it easy to re-apply each time you begin working with a new InSAR velocity dataset. Please see the linked tutorial for details on the data, applications, and each step in this process."
+    "Here we wrap the reorganization of InSAR ice velocity data illustrated in [this tutorial](https://tutorial.xarray.dev/intermediate/data_cleaning/05.3_ice_velocity.html) into a custom Xarray extension that makes it easy to re-apply each time you begin working with a new InSAR velocity dataset. Please see the linked tutorial for details on the data, applications, and each step in this process."
    ]
   },
   {
@@ -425,5 +425,5 @@
   }
  },
  "nbformat": 4,
- "nbformat_minor": 2
+ "nbformat_minor": 4
 }

advanced/apply_ufunc/automatic-vectorizing-numpy.ipynb

@@ -2,7 +2,7 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "id": "6849dcdc-3484-4f41-8b23-51613d36812f",
+   "id": "0",
    "metadata": {
     "tags": []
    },
@@ -13,7 +13,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "afc56d28-6e55-4967-b27d-28e2cc539cc7",
+   "id": "1",
    "metadata": {
     "tags": []
    },
@@ -100,7 +100,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "76aa13b8-5ced-4468-a72e-6b0a29172d6d",
+   "id": "2",
    "metadata": {
     "tags": []
    },
@@ -123,7 +123,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "81356724-6c1a-4d4a-9a32-bb906a9419b2",
+   "id": "3",
    "metadata": {
     "tags": []
    },
@@ -139,7 +139,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "cb286fa0-deba-4929-b18a-79af5acb0b5b",
+   "id": "4",
    "metadata": {
     "tags": []
    },
@@ -160,7 +160,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "e3382658-14e1-4842-a618-ce7a27948c31",
+   "id": "5",
    "metadata": {
     "tags": []
    },
@@ -175,7 +175,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "1476bcce-cc7b-4252-90dd-f45502dffb09",
+   "id": "6",
    "metadata": {
     "tags": [
      "raises-exception"
@@ -198,7 +198,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "1d1da9c2-a634-4920-890c-74d9bec9eab9",
+   "id": "7",
    "metadata": {
     "tags": []
    },
@@ -213,7 +213,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "fa306dcf-eec3-425c-b278-42d15bbc0e4f",
+   "id": "8",
    "metadata": {
     "tags": [
      "raises-exception"
@@ -239,7 +239,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "6f5c928b-f8cb-4016-9d6d-39743f9c2976",
+   "id": "9",
    "metadata": {
     "tags": []
    },
@@ -255,7 +255,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "737cc6b4-522f-488c-9124-524cc42ebef3",
+   "id": "10",
    "metadata": {
     "tags": []
    },
@@ -265,7 +265,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "b6dac8da-8420-4fc4-9aeb-29b8999d4b37",
+   "id": "11",
    "metadata": {
     "tags": []
    },
@@ -291,7 +291,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "d72fdd8c-44d2-4f6e-9fc4-7084e0e49986",
+   "id": "12",
    "metadata": {
     "tags": [],
     "user_expressions": []
@@ -313,7 +313,7 @@
   },
   {
    "cell_type": "markdown",
-   "id": "d81f399e-1649-4d4b-ad28-81cba8403210",
+   "id": "13",
    "metadata": {
     "tags": []
    },