v0.4.1

CITATION.cff

@@ -15,5 +15,8 @@ authors:
     given-names: Suzanne B.
     orcid: https://orcid.org/0000-0002-0489-9207
 title: "Kingfisher: A utility for procurement of public sequencing data"
-version: 0.4.0
-date-released: 2023-09-27
+version: 0.4.1
+date-released: 2024-01-18
+identifiers:
+  - type: doi
+    value: 10.5281/zenodo.10525085

docs/README.md

@@ -194,8 +194,11 @@ This key will then be used in all requests.
 
 ## Citation
 
-Woodcroft B.J., Gans, J., Cunningham M., Hodgkins S.B., Bolduc B., Kingfisher: A
-utility for procurement of public sequencing data. 
+Woodcroft, B. J., Cunningham, M., Gans, J. D., Bolduc, B. B., & Hodgkins, S. B.
+(2023). Kingfisher: A utility for procurement of public sequencing data.
+[Computer software]. DOI: 10.5281/zenodo.10525085.
+
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10525086.svg)](https://doi.org/10.5281/zenodo.10525086)
 
 ## License
 

kingfisher/version.py

@@ -1 +1 @@
-__version__ = "0.4.0"
+__version__ = "0.4.1"

release.py

@@ -2,7 +2,6 @@
 
 import io
 from os.path import dirname, join
-import re
 import extern
 
 def get_version(relpath):
@@ -21,10 +20,15 @@ def get_version(relpath):
     # Replace version in CITATION.cff
     citations_lines = []
     with open("CITATION.cff", "r") as f:
+        import re
         r = re.compile(r"( *version: )")
+        r2 = re.compile(r"( *date-released: )")
         for line in f:
             if matches := r.match(line):
                 line = matches.group(1) + version + "\n"
+            elif matches := r2.match(line):
+                from datetime import datetime
+                line = matches.group(1) + datetime.today().strftime('%Y-%m-%d') + "\n"
             citations_lines.append(line)
     with open("CITATION.cff", "w") as f:
         f.writelines(citations_lines)
@@ -37,5 +41,6 @@ def get_version(relpath):
 
     extern.run('git tag v{}'.format(version))
     print("Now run 'git push && git push --tags' and GitHub actions will build and upload to PyPI".format(version))
+    print("Then make a release, adding changelog info, so Zenodo picks it up")
     print('You have to run ./build.sh from the docker directory to build the docker image, once the tag is on GitHub')