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39 Open 386 Closed
39 Open 386 Closed
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Issues list

problems with parsing the phenotype file in step1 of saige
#449 opened Oct 28, 2024 by cteerlink101
How can I set genotype HOM=0 (no mater it is wild type or mutation) and HET=1?
#448 opened Aug 29, 2024 by jeffchen2000
Pre-computed group files for UKB WES
#446 opened Mar 18, 2024 by aanighoro
The appropriate sample size for continuous and binary traits analysis in SAIGE-GENE+
#445 opened Jan 2, 2024 by jxcao98
Error running Step 1 on UKBB dataset.
#444 opened Dec 4, 2023 by nanjalaruth
Chromosome coding UKBB
#443 opened Nov 20, 2023 by nandobonf
R CMD INSTALL SAIGE
#442 opened Nov 13, 2023 by yang285
Error in mainRegionInCPP
#441 opened Oct 24, 2023 by willow9505
Trying to get LOCO=True to work
#440 opened Sep 26, 2023 by Ankeet3
Step1, sorting of sample ids
#439 opened Sep 21, 2023 by Ankeet3
createSparseGRM script (step0) doesn’t work
#438 opened Sep 1, 2023 by omrak
How do you create the SparseSigmafile?
#437 opened Aug 18, 2023 by Ruedog
Should this SAIGE be closed since you have a new SAIGE page?
#436 opened Aug 2, 2023 by StripelessWatermelon
possible issue with categorical variables used as covariates?
#435 opened Jul 30, 2023 by brettva
createSparseGRM error
#434 opened Jul 25, 2023 by BIjoy92
Can dominant model be used in single variant test?
#432 opened Jul 2, 2023 by koko-mo-127
Can't install
#431 opened Jun 14, 2023 by Welz2
Error at step2 on chrX
#430 opened Jun 12, 2023 by eightYao2
Error in getopt(spec = spec, opt = args) : long flag "bedFile" is invalid
#429 opened Jun 7, 2023 by jingydz
4
Error creating sparseGRM using 200k WES
#427 opened May 25, 2023 by ajlee21
floating point exception raised during step2 SPAtests
#426 opened May 17, 2023 by mstapylton
Using SAIGE on correlated phenotypic data
#425 opened Apr 7, 2023 by AudeIkuzwe04
Empty Step 1 SAIGE files
#423 opened Mar 2, 2023 by AudeIkuzwe04
Error in if (pval != 0 && pval.noadj/pval > 10^3)
#422 opened Feb 27, 2023 by ilovemr
1
heterogeneity of effect
#421 opened Feb 10, 2023 by psychrb
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