celltoxdb

Cell line toxicity database

This is a Flask based app to store and retrieve Cell line toxicity data. Built for the Schirmer Lab at EAWAG.

Files and functions

R
chemical_info.R
fitdr.R
xls_properties.R

BLAH

• README.md
• app
  • assets
    • dash_v01.css
  • models.py
  • plotlydash
    • assets
      • dash_v1.css
    • dashboard.py
    • layout.py
  • static
    • css
      • dropdown.css
      • forms.css
      • main_1.css
    • js
      • dropdown.js
      • trie.js
  • templates
    • 404.html
    • _formatnumbers.html
    • _formhelpers.html
    • _tablehelpers.html
    • browse.html
    • impressum.html
    • main.html
    • plot.html
    • search.html
    • search_results.html
    • show.html
    • upload.html
    • uploaded.html
    • widgets
      • list_download.html
  • translations
    • pt
      • LC_MESSAGES
        • messages.mo
        • messages.po
  • views.py
• babel - babel.cfg - messages.pot
• config.py
• custom_validators.py
• fileIO.py
• filter_widgets.py
• forms.py
• init_db.py
• insert_db.py
• populate_db.py
• query_lib.py
• requirements.txt
• search.py
• test.py
• update_db.py
• upload.py
• utils.py

Blah.Blah

R

chemical_info.R

reads data from an Excel file, performs data manipulation and transformation operations on the selected columns, modifies column names, and writes the resulting data frame to a JSON file.

fitdr.R

processes dose-response data, fits dose-response models, generates plots, calculates estimated values, and saves the results

xls_properties.R

reads an Excel file, extracts the year from the "Date" column, selects specific columns of interest, reshapes the data, performs some string manipulation, and saves the processed data as a CSV file

assets/dash_v01.css

css styling for the plotly dashboard