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JARVIS-Tools github action

Develop #1312

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Develop

Develop #1312

Workflow file for this run

.github/workflows/action_build.yml at dbd31d7
name: JARVIS-Tools github action
on: [push, pull_request]
jobs:
checks:
name: Checks
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.9","3.10"]
steps:
- uses: actions/checkout@v2
- name: Setup Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- uses: actions/cache@v2
with:
path: ${{ env.pythonLocation }}
key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('dev-requirements.txt') }}
- name: Install requirements
run: |
pip install --upgrade pip
pip install pycodestyle flake8 pydocstyle
flake8 --ignore E203,W503 --exclude=examples,tests --statistics --count --exit-zero jarvis
pycodestyle --ignore E203,W503 --exclude=examples,testfiles jarvis
pydocstyle --match-dir=core --match-dir=io --match-dir=io --match-dir=ai --match-dir=analysis --match-dir=db --match-dir=tasks --count jarvis
#python setup.py develop
#pip install --upgrade --upgrade-strategy eager -r dev-requirements.txt -e .
#conda install -c ambermd pytraj
pip install numpy scipy matplotlib
pip install -r dev-requirements.txt
pip install -e .
echo 'CONDA LIST'
conda list
echo 'PIP FREEZE'
pip freeze
#echo 'PYTEST-COV'
#pytest --cov-config=.coveragerc --cov=jarvis -n 2
coverage run -m pytest
coverage report -m -i
codecov
codecov --token="b61081a0-39de-44a8-8a9c-97d4be82af6d"
# git clone https://github.com/QEF/q-e.git
# cd q-e
# ./configure
# make pw
# jobs:
# checks:
# name: Checks
# runs-on: ubuntu-latest
# strategy:
# matrix:
# python-version: ["3.9","3.10"]
# steps:
# - uses: actions/checkout@v2
# - name: Setup Python ${{ matrix.python-version }}
# uses: actions/setup-python@v2
# with:
# python-version: ${{ matrix.python-version }}
# - uses: actions/cache@v2
# with:
# path: ${{ env.pythonLocation }}
# key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('dev-requirements.txt') }}
# - name: Install requirements
# run: |
# python setup.py develop
# pip install --upgrade --upgrade-strategy eager -r dev-requirements.txt -e .
# #conda install -c ambermd pytraj
# echo 'CONDA LIST'
# conda list
# echo 'PIP FREEZE'
# pip freeze
# #echo 'PYTEST-COV'
# #pytest --cov-config=.coveragerc --cov=jarvis -n 2
# coverage run -m pytest
# coverage report -m -i
# codecov
# codecov --token="b61081a0-39de-44a8-8a9c-97d4be82af6d"
# # git clone https://github.com/QEF/q-e.git
# # cd q-e
# # ./configure
# # make pw
#jobs:
# miniconda:
# name: Miniconda ${{ matrix.os }}
# runs-on: ${{ matrix.os }}
# strategy:
# matrix:
# os: ["ubuntu-latest"]
# steps:
# - uses: actions/checkout@v2
# - uses: conda-incubator/setup-miniconda@v2
# with:
# activate-environment: test
# python-version: 3.8
# auto-activate-base: false
# - shell: bash -l {0}
# run: |
# conda info
# conda list
# - uses: actions/cache@v2
# with:
# path: ~/.cache/pip
# key: ${{ hashFiles('setup.py') }}-${{ hashFiles('dev-requirements.txt') }}
# - name: Run pytest
# shell: bash -l {0}
# run: |
# python setup.py develop
# #pip uninstall qiskit
# # pip install qiskit ase numpy==1.18.5 scipy==1.4.1 matplotlib>=3.0.0 phonopy==2.8.1 coverage lightgbm==2.1.0 flask joblib networkx scikit-learn pandas pennylane==0.14.1 dgl tqdm codecov torch keras tensorflow==2.3.0 pytest pytest-cov bokeh pytest-xdist
# # pip install git+https://github.com/aspuru-guzik-group/tequila.git
# # pip install -r requirements-for-ci-only.txt
# # pip install -r dev-requirements.txt
# pip install --upgrade --upgrade-strategy eager -r dev-requirements.txt -e .
# echo 'CONDA LIST'
# conda list
# echo 'PIP FREEZE'
# pip freeze
# #echo 'PYTEST-COV'
# #pytest --cov-config=.coveragerc --cov=jarvis -n 2
# coverage run -m pytest
# coverage report -m
# codecov
# codecov --token="b61081a0-39de-44a8-8a9c-97d4be82af6d"
# # git clone https://github.com/QEF/q-e.git
# # cd q-e
# # ./configure
# # make pw