Batch Connect - RStudio Server

A Batch Connect app that launches an RStudio server within a batch job.

Prerequisites

This Batch Connect app requires the following software be installed on the compute nodes that the batch job is intended to run on (NOT the OnDemand node):

• RStudio
• R
• Singularity

All Batch Connect apps also require the following on the compute nodes:

• Websockify
• TurboVNC
• nc (netcat)

Optional software:

• Lmod 6.0.1+ or any other module purge and module load <modules> based CLI used to load appropriate environments within the batch job before launching the RStudio server.

Install

If you have not already be sure to start with the section about setting up your system for Batch Connect development.

Contributing

1. Fork it ( https://github.com/ucdavis/hpccf-ood-rstudio/fork )
2. Create your feature branch (git checkout -b my-new-feature)
3. Commit your changes (git commit -am 'Add some feature')
4. Push to the branch (git push origin my-new-feature)
5. Create a new Pull Request