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admin/software/index.html

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@@ -1976,7 +1964,7 @@ <h4 id="generate-modulefiles">Generate Modulefiles<a class="headerlink" href="#g
 <p>Ensure that the modulefiles are generated. This generally happens on its own, but on occasion needs to be kicked off manually:</p>
 <div class="highlight"><pre><span></span><code><a id="__codelineno-8-1" name="__codelineno-8-1" href="#__codelineno-8-1"></a>spack<span class="w"> </span>module<span class="w"> </span>tcl<span class="w"> </span>refresh<span class="w"> </span>name-of-software
 </code></pre></div>
-<h3 id="check-the-software">Check the Software<a class="headerlink" href="#check-the-software" title="Permanent link">&para;</a></h3>
+<h4 id="check-the-software">Check the Software<a class="headerlink" href="#check-the-software" title="Permanent link">&para;</a></h4>
 <p>You should do a cursory check that the software actually works. Usually the best way to do this is to just run <code>name-of-software -h</code>. For example, for the software <code>fastani</code>:</p>
 <div class="highlight"><pre><span></span><code><a id="__codelineno-9-1" name="__codelineno-9-1" href="#__codelineno-9-1"></a><span class="gp">$ </span>module<span class="w"> </span>load<span class="w"> </span>fastani/1.33
 <a id="__codelineno-9-2" name="__codelineno-9-2" href="#__codelineno-9-2"></a><span class="gp">$ </span>fastANI<span class="w"> </span>-h<span class="w">   </span>

franklin/software/modules/index.html

@@ -3897,7 +3897,7 @@ <h3 id="gatk">gatk<a class="headerlink" href="#gatk" title="Permanent link">&par
 <h3 id="gcc">gcc<a class="headerlink" href="#gcc" title="Permanent link">&para;</a></h3>
 <p>The GNU Compiler Collection includes front ends for C, C++, Objective-C,
 Fortran, Ada, and Go, as well as libraries for these languages.</p>
-<p><strong>Versions</strong>: 4.9.4, 5.5.0, 7.5.0</p>
+<p><strong>Versions</strong>: 4.9.4, 7.5.0, 5.5.0</p>
 <p><strong>Arches</strong>: generic</p>
 <p><strong>Modules</strong>: <code>gcc/5.5.0</code>, <code>gcc/7.5.0</code>, <code>gcc/4.9.4</code></p>
 <h3 id="gctf">gctf<a class="headerlink" href="#gctf" title="Permanent link">&para;</a></h3>
@@ -4207,7 +4207,7 @@ <h3 id="nextflow">nextflow<a class="headerlink" href="#nextflow" title="Permanen
 <p><strong>Modules</strong>: <code>nextflow/22.10.1</code></p>
 <h3 id="openjdk">openjdk<a class="headerlink" href="#openjdk" title="Permanent link">&para;</a></h3>
 <p>The free and opensource java implementation</p>
-<p><strong>Versions</strong>: 11.0.17_8, 16.0.2</p>
+<p><strong>Versions</strong>: 16.0.2, 11.0.17_8</p>
 <p><strong>Arches</strong>: generic</p>
 <p><strong>Modules</strong>: <code>openjdk/11.0.17_8</code>, <code>openjdk/16.0.2</code></p>
 <h3 id="openldap">openldap<a class="headerlink" href="#openldap" title="Permanent link">&para;</a></h3>
@@ -4354,9 +4354,9 @@ <h3 id="relion">relion<a class="headerlink" href="#relion" title="Permanent link
 stand-alone computer program that employs an empirical Bayesian approach
 to refinement of (multiple) 3D reconstructions or 2D class averages in
 electron cryo-microscopy (cryo-EM).</p>
-<p><strong>Versions</strong>: 3.1.3, 4.0.1, 4.0.0</p>
-<p><strong>Variants</strong>: cpu, gpu</p>
-<p><strong>Arches</strong>: amd, intel, intel+gpu_delay</p>
+<p><strong>Versions</strong>: 3.1.3, 4.0.0, 4.0.1</p>
+<p><strong>Variants</strong>: gpu, cpu</p>
+<p><strong>Arches</strong>: intel+gpu_delay, intel, amd</p>
 <p><strong>Modules</strong>: <code>relion/cpu/3.1.3+amd</code>, <code>relion/gpu/3.1.3+amd</code>, <code>relion/gpu/3.1.3+intel</code>, <code>relion/cpu/4.0.0+amd</code>, <code>relion/gpu/4.0.0+amd</code>, <code>relion/gpu/4.0.0+intel</code>, <code>relion/3.1.3</code>, <code>relion/4.0.0</code>, <code>relion/cpu/4.0.1+amd</code>, <code>relion/gpu/4.0.1+amd</code>, <code>relion/4.0.1</code>, <code>relion/gpu/4.0.1+intel+gpu_delay</code>, <code>relion/gpu/4.0.1+intel</code></p>
 <h3 id="relion-bbr">relion-bbr<a class="headerlink" href="#relion-bbr" title="Permanent link">&para;</a></h3>
 <p>A modified version of Relion supporting block-based-reconstruction as