INSTALLATION: Download this application from github(e.g. download as ZIP) Open terminal and go to the directory of the folder that was downloaded and open R console. If packrat(a dependency manager package) is installed, turn it off by typing packrat::off()
Installing packages(if not already installed):
Install devtools first. command: install.packages(devtools)
rcytoscapjs: Commands: library("devtools"); devtools::install_github("cytoscape/r-cytoscape.js");
For more info:https://github.com/cytoscape/r-cytoscape.js
shiny: Command: install.packages("shiny")
shinyjs: Commands: install.packages("shinyjs")
Bionet: Command: source("https://bioconductor.org/biocLite.R"); biocLite("BioNet")
For more info:https://www.bioconductor.org/packages/release/bioc/html/BioNet.html
CLEAN: Command: install_github("uc-bd2k/CLEAN")
CLEAN.Hs: Command: install_github("uc-bd2k/CLEAN.Hs")
RMySQL: Command: install.packages("RMySQL")
SigNetAcytoscapejs: Command: install_github("Saadman/SigNetAcytoscapejs")
While running the application there might be a prompt to install new packages if it doesn't already exist in the users library.
RUNNING THE APPLICATION:
Command: library(shiny) runApp()
*Tested on Chrome browser