🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations

showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

SWift and Optimized Recognition of protein Domains

Estimate PTM hotspots in protein sequence alignments

A suite of tools to build and search generalized profiles

MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.

👐 TADOSS: TAndem DOmain Swap Stability predictor

An automated method to map yeast variants to proteins modifications and functional regions

dom2vec: Protein domain embeddings

FAS - Tool for Feature Architecture Similarity calculation

Comparison of protein learning

UniParc dataset describing ~300 million protein sequences converted into relational tables accessible through Google BigQuery (and as Parquet files).

protein domain prediction

Refining Domain Boundaries and Performing Large Scale Parsing

Profile hidden Markov model (HMM) to identify the Kunitz domain in protein sequences, using MSA-guided training and optimization.

THIS PROJECT IS NO LONGER SUPPORTED See Brivez Instead!! https://github.com/furacca/brivez/ - ------------------------------------------ - Cuterle is a bioinformatic tool which return an output file containing every domain annotated by InterProScan via Pfam or SMART analysis from the list of protein submitted.

CroMaSt (Cross Mapper of domain Structural instances) is an automated iterative workflow to clarify domain definition by cross-mapping of domain structural instances between domain databases.

Protein sequence domain predictor

A Bio2BEL package for converting InterPro to BEL

Automated analysis tool for mutations in promoters, transcription factor binding sites, coding regions and protein domains in the context of gene regulatory networks.