chore: R CMD check fixes

.Rbuildignore

@@ -9,3 +9,8 @@
 ^res-duckdb\.csv$
 ^\.github$
 ^R/qs\.R$
+^\.sync$
+^res-duckplyr-raw\.csv$
+^res-duckplyr\.csv$
+^res-relational-duckdb\.csv$
+^R/meta\.R$

.github/workflows/R-CMD-check.yaml

@@ -47,4 +47,4 @@ jobs:
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true
-          error-on: '"error"'
+          error-on: '"warning"'

DESCRIPTION

@@ -40,8 +40,10 @@ Suggests:
     lobstr,
     lubridate,
     palmerpenguins,
+    pillar,
     prettycode,
     qs,
+    styler,
     testthat (>= 3.1.5),
     withr
 Encoding: UTF-8

NAMESPACE

@@ -12,7 +12,6 @@ S3method(distinct,duckplyr_df)
 S3method(do,duckplyr_df)
 S3method(dplyr_reconstruct,duckplyr_df)
 S3method(explain,duckplyr_df)
-S3method(filter,duckplyr_df)
 S3method(format,relational_relexpr)
 S3method(full_join,duckplyr_df)
 S3method(group_vars,duckplyr_df)

R/aaa-meta.R

@@ -0,0 +1,6 @@
+# Overwritten in meta.R
+meta_rel_register <- function(...) {}
+meta_rel_register_df <- function(...) {}
+meta_rel_register_file <- function(...) {}
+meta_rel_get <- function(...) {}
+meta_macro_register <- function(...) {}

R/as_duckplyr_df.R

@@ -1,3 +1,7 @@
+#' Convert to a duckplyr data frame
+#'
+#' @param .data data frame or tibble to transform
+#'
 #' @export
 as_duckplyr_df <- function(.data) {
   if (inherits(.data, "duckplyr_df")) {

R/csv.R

@@ -1,3 +1,10 @@
+#' TODO
+#'
+#' @param path Path to file TODO add what kind
+#'
+#' @param table_function TODO
+#' @param options TODO
+#'
 #' @export
 duckdb_from_file <- function(path, table_function, options=list()) {
   # FIXME: For some reason, it's important to create an alias here
@@ -15,6 +22,13 @@ duckdb_from_file <- function(path, table_function, options=list()) {
   duckdb:::rel_to_altrep(out)
 }
 
+#' TODO
+#'
+#' @param path Path to file TODO add what kind
+#'
+#' @param table_function TODO
+#' @param options TODO
+#'
 #' @export
 duckplyr_df_from_file <- function(path, table_function, options=list()) {
   out <- duckdb_from_file(path, table_function, options)

R/filter.R

@@ -1,5 +1,10 @@
 # Generated by 02-duckplyr_df-methods.R
-#' @export
+
+# Needed for R <= 4.2, can't use @export here:
+on_load({
+  vctrs::s3_register("dplyr::filter", "duckplyr_df")
+})
+
 filter.duckplyr_df <- function(.data, ..., .by = NULL, .preserve = FALSE) {
   force(.data)
 

R/is_duckplyr_df.R

@@ -1,3 +1,7 @@
+#' Class predicate for duckplyr data frames
+#'
+#' @param .data Data
+#'
 #' @export
 is_duckplyr_df <- function(.data) {
   inherits(.data, "duckplyr_df")

R/overwrite.R

@@ -1,3 +1,5 @@
+#' Methods overwriting
+#'
 #' @export
 methods_overwrite <- function() {
   vctrs::s3_register("dplyr::add_count", "data.frame", duckplyr:::add_count.duckplyr_df)

R/relational-altrep-wrap.R

@@ -1,8 +1,16 @@
+#' TODO
+#'
+#' @param x TODO row
+#'
 #' @export
 wrap_integer <- function(x) {
   .Call(chunkrep_wrap, x)
 }
 
+#' TODO
+#'
+#' @param df data frame
+#'
 #' @export
 wrap_df <- function(df) {
   stopifnot(is.data.frame(df))

R/relational-rel.R

@@ -126,6 +126,7 @@ rel_order <- function(rel, orders, ...) {
 #' @param right the right-hand-side relation object
 #' @param conds a list of DuckDB expressions to use for the join
 #' @param join type of join
+#' @param join_ref_type ref type of join
 #' @return a new relation object resulting from the join
 #' @export
 #' @examples

R/restore.R

@@ -1,3 +1,5 @@
+#' Methods restoring
+#'
 #' @export
 methods_restore <- function() {
   vctrs::s3_register("dplyr::add_count", "data.frame", dplyr:::add_count.data.frame)

R/stats.R

@@ -1,10 +1,12 @@
 stats <- new_environment(list(attempts = 0L, fallback = 0L, calls = character()))
 
+#' Show stats
+#'
 #' @export
 stats_show <- function() {
   writeLines(paste0(
     c("\U0001f6e0", "\U0001f528", "\U0001f986"),
-    "️: ",
+    paste0("\u003A", " "),
     format(c(stats$attempts, stats$fallback, stats$attempts - stats$fallback))
   ))
   calls <- sort(gsub("[.]duckplyr_df", "", stats$calls))

patch/distinct.patch

@@ -1,8 +1,12 @@
 diff --git b/R/distinct.R a/R/distinct.R
-index 1975ca6..3538b76 100644
+index 1975ca6..3f246ab 100644
 --- b/R/distinct.R
 +++ a/R/distinct.R
-@@ -3,8 +3,62 @@
+@@ -1,10 +1,66 @@
+ # Generated by 02-duckplyr_df-methods.R
++globalVariables("___row_number_by")
++
+ #' @export
  distinct.duckplyr_df <- function(.data, ..., .keep_all = FALSE) {
    # Our implementation
    rel_try(

patch/filter.patch

@@ -1,10 +1,16 @@
 diff --git b/R/filter.R a/R/filter.R
-index 4b91919..36ed7f3 100644
+index 4b91919..1ccc3f9 100644
 --- b/R/filter.R
 +++ a/R/filter.R
-@@ -1,10 +1,23 @@
+@@ -1,10 +1,28 @@
  # Generated by 02-duckplyr_df-methods.R
- #' @export
+-#' @export
++
++# Needed for R <= 4.2, can't use @export here:
++on_load({
++  vctrs::s3_register("dplyr::filter", "duckplyr_df")
++})
++
  filter.duckplyr_df <- function(.data, ..., .by = NULL, .preserve = FALSE) {
 -  # Our implementation
 +  force(.data)

patch/summarise.patch

@@ -1,9 +1,11 @@
 diff --git b/R/summarise.R a/R/summarise.R
-index 482068f..aea4a71 100644
+index 482068f..583d121 100644
 --- b/R/summarise.R
 +++ a/R/summarise.R
-@@ -1,10 +1,50 @@
+@@ -1,10 +1,52 @@
  # Generated by 02-duckplyr_df-methods.R
++globalVariables("___row_number")
++
  #' @export
  summarise.duckplyr_df <- function(.data, ..., .by = NULL, .groups = NULL) {
 -  # Our implementation

tests/testthat/setup.R

@@ -12,3 +12,5 @@ withr::defer(envir = testthat::teardown_env(), {
   writeLines("")
   writeLines(format(hms::as_hms(Sys.time() - start)))
 })
+
+styler::cache_deactivate()

tests/testthat/test-dplyr.R

@@ -6,7 +6,7 @@ test_that("no homonyms", {
   names_duckplyr <- ls(duckplyr)
 
   names_common <- intersect(names_dplyr, names_duckplyr)
-  names_common <- setdiff(names_common, "DataMask")
+  names_common <- setdiff(names_common, c("DataMask", "the"))
 
   objs_dplyr <- mget(names_common, dplyr)
   objs_duckplyr <- mget(names_common, duckplyr)

tools/02-duckplyr_df-methods.R

@@ -201,14 +201,18 @@ walk(patches, ~ system(paste0("patch -p1 < ", .x)))
 
 # Stop here to overwrite files if the code generation is updated
 
+
 system(paste0("git clean -f -- R"))
 
 
 # Collect new patches -----------------------------------------------------------------
 
-r_status <- gert::git_status(pathspec = "R/*.R")
+r_status <- gert::git_status(pathspec = "R/*.R")$file
+
+# Use this to refresh all patches
+# r_status <- fs::dir_ls("R", glob = "*.R")
 
-walk(r_status$file, function(file) {
+walk(r_status, function(file) {
   patch_path <- gsub("R/(.*)[.]R", "patch/\\1.patch", file)
   if (fs::file_exists(patch_path)) {
     system(paste0("patch -p1 -R < ", patch_path))