fix(jats): extract id and label of author notes separately

Addresses elifesciences/enhanced-preprints-issues#769
stencila · Apr 28, 2024 · b5562c5 · b5562c5
1 parent f036307
commit b5562c5
Show file tree

Hide file tree

Showing 27 changed files with 459 additions and 77 deletions.
diff --git a/src/codecs/elife/__file_snapshots__/45123.yaml b/src/codecs/elife/__file_snapshots__/45123.yaml
@@ -18,6 +18,9 @@ authors:
       - Lozano-Ureña
     givenNames:
       - Anna
+    meta:
+      notes:
+        - rid: conf1
   - type: Person
     affiliations:
       - type: Organization
@@ -49,6 +52,9 @@ authors:
       - type: PropertyValue
         propertyID: https://registry.identifiers.org/registry/orcid
         value: http://orcid.org/0000-0003-0854-8575
+    meta:
+      notes:
+        - rid: conf1
 dateAccepted:
   type: Date
   value: '2019-02-15'

diff --git a/src/codecs/elife/__file_snapshots__/46793.yaml b/src/codecs/elife/__file_snapshots__/46793.yaml
@@ -22,6 +22,12 @@ authors:
       - type: PropertyValue
         propertyID: https://registry.identifiers.org/registry/orcid
         value: https://orcid.org/0000-0002-4997-0150
+    meta:
+      notes:
+        - rid: equal-contrib1
+          label: †
+        - rid: con1
+        - rid: conf1
   - type: Person
     affiliations:
       - type: Organization
@@ -35,6 +41,12 @@ authors:
     givenNames:
       - Darcie
       - S
+    meta:
+      notes:
+        - rid: equal-contrib1
+          label: †
+        - rid: con2
+        - rid: conf1
   - type: Person
     affiliations:
       - type: Organization
@@ -54,6 +66,10 @@ authors:
       - type: PropertyValue
         propertyID: https://registry.identifiers.org/registry/orcid
         value: https://orcid.org/0000-0002-1501-2106
+    meta:
+      notes:
+        - rid: con3
+        - rid: conf1
   - type: Person
     affiliations:
       - type: Organization
@@ -71,6 +87,10 @@ authors:
       - type: PropertyValue
         propertyID: https://registry.identifiers.org/registry/orcid
         value: https://orcid.org/0000-0001-9806-2805
+    meta:
+      notes:
+        - rid: con4
+        - rid: conf1
   - type: Person
     affiliations:
       - type: Organization
@@ -91,6 +111,10 @@ authors:
       - type: PropertyValue
         propertyID: https://registry.identifiers.org/registry/orcid
         value: https://orcid.org/0000-0002-7321-1867
+    meta:
+      notes:
+        - rid: con5
+        - rid: conf1
   - type: Person
     affiliations:
       - type: Organization
@@ -103,6 +127,10 @@ authors:
       - Erard
     givenNames:
       - Nicolas
+    meta:
+      notes:
+        - rid: con6
+        - rid: conf1
   - type: Person
     affiliations:
       - type: Organization
@@ -120,6 +148,10 @@ authors:
       - type: PropertyValue
         propertyID: https://registry.identifiers.org/registry/orcid
         value: https://orcid.org/0000-0003-4021-3898
+    meta:
+      notes:
+        - rid: con7
+        - rid: conf2
   - type: Person
     affiliations:
       - type: Organization
@@ -136,6 +168,10 @@ authors:
       - type: PropertyValue
         propertyID: https://registry.identifiers.org/registry/orcid
         value: https://orcid.org/0000-0002-3811-6864
+    meta:
+      notes:
+        - rid: con8
+        - rid: conf1
   - type: Person
     affiliations:
       - type: Organization
@@ -172,6 +208,10 @@ authors:
       - type: PropertyValue
         propertyID: https://registry.identifiers.org/registry/orcid
         value: https://orcid.org/0000-0002-0281-5815
+    meta:
+      notes:
+        - rid: con9
+        - rid: conf3
 dateAccepted:
   type: Date
   value: '2019-06-17'
@@ -9140,7 +9180,9 @@ references:
 title: Genetic interactions of G-quadruplexes in humans
 meta:
   authorNotes:
-    - † These authors contributed equally to this work
+    - id: equal-contrib1
+      label: †
+      text: These authors contributed equally to this work
 content:
   - type: Heading
     id: s1

diff --git a/src/codecs/jats/__file_snapshots__/81445f02-6bf5-1014-892a-9f5909cc27c1.json b/src/codecs/jats/__file_snapshots__/81445f02-6bf5-1014-892a-9f5909cc27c1.json
@@ -45,7 +45,15 @@
       ],
       "givenNames": [
         "Tianze"
-      ]
+      ],
+      "meta": {
+        "notes": [
+          {
+            "rid": "n1",
+            "label": "*"
+          }
+        ]
+      }
     },
     {
       "type": "Person",
@@ -64,7 +72,15 @@
       ],
       "givenNames": [
         "Jing"
-      ]
+      ],
+      "meta": {
+        "notes": [
+          {
+            "rid": "n1",
+            "label": "*"
+          }
+        ]
+      }
     },
     {
       "type": "Person",
@@ -3928,7 +3944,11 @@
   "title": "Aging-related iron deposit prevents the benefits of HRT from late postmenopausal atherosclerosis",
   "meta": {
     "authorNotes": [
-      "* Tianze Xu and Jing Cai contributed equally to this work"
+      {
+        "id": "n1",
+        "label": "*",
+        "text": "Tianze Xu and Jing Cai contributed equally to this work"
+      }
     ]
   },
   "content": [

diff --git a/src/codecs/jats/__file_snapshots__/8758d58a-6c3d-1014-87a3-bbc202f7d832.json b/src/codecs/jats/__file_snapshots__/8758d58a-6c3d-1014-87a3-bbc202f7d832.json
@@ -53,7 +53,15 @@
       ],
       "givenNames": [
         "Valentin"
-      ]
+      ],
+      "meta": {
+        "notes": [
+          {
+            "rid": "n1",
+            "label": "8"
+          }
+        ]
+      }
     },
     {
       "type": "Person",
@@ -99,7 +107,15 @@
       ],
       "givenNames": [
         "Vanessa"
-      ]
+      ],
+      "meta": {
+        "notes": [
+          {
+            "rid": "n2",
+            "label": "†"
+          }
+        ]
+      }
     },
     {
       "type": "Person",
@@ -118,7 +134,15 @@
       ],
       "givenNames": [
         "Paul"
-      ]
+      ],
+      "meta": {
+        "notes": [
+          {
+            "rid": "n2",
+            "label": "†"
+          }
+        ]
+      }
     },
     {
       "type": "Person",
@@ -145,7 +169,15 @@
       ],
       "givenNames": [
         "Hélène"
-      ]
+      ],
+      "meta": {
+        "notes": [
+          {
+            "rid": "n2",
+            "label": "†"
+          }
+        ]
+      }
     },
     {
       "type": "Person",
@@ -164,7 +196,15 @@
       ],
       "givenNames": [
         "Zhicheng"
-      ]
+      ],
+      "meta": {
+        "notes": [
+          {
+            "rid": "n2",
+            "label": "†"
+          }
+        ]
+      }
     },
     {
       "type": "Person",
@@ -240,7 +280,15 @@
       ],
       "givenNames": [
         "Hang-Phuong"
-      ]
+      ],
+      "meta": {
+        "notes": [
+          {
+            "rid": "n1",
+            "label": "8"
+          }
+        ]
+      }
     },
     {
       "type": "Person",
@@ -6667,8 +6715,16 @@
   ],
   "meta": {
     "authorNotes": [
-      "8 Present Institution: Parean biotechnologies, Saint-Malo, France",
-      "† These authors, listed in alphabetical order, have contributed equally"
+      {
+        "id": "n1",
+        "label": "8",
+        "text": "Present Institution: Parean biotechnologies, Saint-Malo, France"
+      },
+      {
+        "id": "n2",
+        "label": "†",
+        "text": "These authors, listed in alphabetical order, have contributed equally"
+      }
     ]
   },
   "content": [

diff --git a/src/codecs/jats/__file_snapshots__/c2c3813f-6c98-1014-8ba7-9ee2cd5f4386.json b/src/codecs/jats/__file_snapshots__/c2c3813f-6c98-1014-8ba7-9ee2cd5f4386.json
@@ -46,7 +46,15 @@
       "givenNames": [
         "Phuong",
         "T."
-      ]
+      ],
+      "meta": {
+        "notes": [
+          {
+            "rid": "n1",
+            "label": "†"
+          }
+        ]
+      }
     },
     {
       "type": "Person",
@@ -66,7 +74,15 @@
       "givenNames": [
         "Hai",
         "M."
-      ]
+      ],
+      "meta": {
+        "notes": [
+          {
+            "rid": "n1",
+            "label": "†"
+          }
+        ]
+      }
     },
     {
       "type": "Person",
@@ -7537,7 +7553,11 @@
   ],
   "meta": {
     "authorNotes": [
-      "† These authors contributed equally to this work."
+      {
+        "id": "n1",
+        "label": "†",
+        "text": "These authors contributed equally to this work."
+      }
     ]
   },
   "content": [