Handle missing consequence mapping

statgen · Jul 18, 2023 · 438b8cd · 438b8cd
1 parent 6e05eed
commit 438b8cd
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Showing 4 changed files with 7 additions and 2 deletions.
diff --git a/package.json b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "bravue",
-  "version": "0.12.5",
+  "version": "0.12.6",
   "private": true,
   "scripts": {
     "serve": "vue-cli-service serve",

diff --git a/src/assets/snv_consequences.css b/src/assets/snv_consequences.css
@@ -1,6 +1,7 @@
 .badge--transcript_ablation { color: #fb0007;}
 .badge--splice_acceptor_variant { color: #fc4016;}
 .badge--splice_donor_variant { color: #fc4016;}
+.badge--splice_donor_5th_base_variant { color: #fc4016;}
 .badge--stop_gained { color: #fb0007;}
 .badge--frameshift_variant { color: #8000c9;}
 .badge--stop_lost { color: #fb0007;}

diff --git a/src/components/table/GeneSNVTable.vue b/src/components/table/GeneSNVTable.vue
@@ -70,7 +70,7 @@ export default {
           let html = ""
           let annotations = cell.getValue()
           if (annotations.length > 0) {
-            let title = snvConsequences[annotations[0]].title 
+            let title = snvConsequences[annotations[0]].title || annotations[0] 
             let cssClass = `badge--${annotations[0]}`
             html += `<div class="snvtable__cell--clickable" role="button">`
             html += `<span class="badge badge-light clickable ${cssClass}" style="">${title} </span>`

diff --git a/src/domainModel/snvConsequences.js b/src/domainModel/snvConsequences.js
@@ -51,6 +51,10 @@ export default {
     title: "splice donor",
     desc: "A splice variant that changes the 2 base region at the 5' end of an intron"
   },
+  "splice_donor_5th_base_variant": {
+    title: "splice donor_5th",
+    desc: "A sequence variant that causes a change at the 5th base pair after the start of the intron in the orientation of the transcript."
+  },
   "transcript_amplification": {
     title: "transcript amplification",
     desc: "A feature amplification of a region containing a transcript"