JWST 1.16.1 (DMS build B11.1rc2)

What's Changed

• Add NIRSpec WCS fix to patch branch by @tapastro in #8933
• Update dependencies in requirements-sdp.txt by @jhunkeler in #8956

Full Changelog: 1.16.0...1.16.1

JWST 1.16.0 (DMS build B11.1rc1)

What's Changed

• add Brett Graham to citation by @braingram in #8627
• JP-3631: remove direct setting of self.skip within calibration steps by @emolter in #8600
• RTD: Restore tags for all branches by @jhunkeler in #8633
• Adding version information to the landing page by @jhunkeler in #8642
• refactor msa fail/nofail and association duplicate tests to not use caplog by @braingram in #8628
• move ruff and bandit checks to pre-commit by @zacharyburnett in #8646
• JP-3687: fix outlier_detection failures when run outside pipeline by @emolter in #8645
• Remove some unused modules by @AlexKurek in #8630
• RTD: Clear the dirty git index flag by @jhunkeler in #8644
• remove non-working or out-dated scripts by @braingram in #8619
• JP-3634: Fix for custom WCS unit test by @melanieclarke in #8620
• docs(README): link CRDS PUB by @guspan-tanadi in #8658
• lint jwst/fits_generator and jwst/associations by @zacharyburnett in #8652
• unlink deleted scripts from build metadata by @zacharyburnett in #8659
• JP-3636: Fix crash in tweakreg due to MalformedPolygonError by @mcara in #8657
• JP-3312 Support Update from RHEL7 to RHEL9 by @penaguerrero in #8653
• JP-3657: Part 1 of a NIRSpec BOTS speedup by @t-brandt in #8609
• JP-3668: Move tweakreg into stcal by @emolter in #8624
• JP-3547: Flux conservation for spectral resampling by @melanieclarke in #8596
• [SCSB-155] build with Numpy 2.0 by @zacharyburnett in #8527
• fix bug in AmiAverageStep spec that prevents step creation by @braingram in #8677
• JP-3628: Revise coron3 alignment step by @penaguerrero in #8643
• Outlier detection refactoring by @braingram in #8613
• Reset 'seen' flag in log watcher after check by @melanieclarke in #8686
• JP-3696: Ensure EMICORR correction is never NaN by @drlaw1558 in #8675
• replace usage of copy_arrays=True with memmap=False by @zacharyburnett in #8660
• Remove stsci.image dependency by @braingram in #8663
• JP-3679: Separate resample_spec parameters from resample step by @melanieclarke in #8622
• JP-3444: update tso photometry to use ApertureStats by @jemorrison in #8672
• JP-2928: Update NIRSpec IRS2 detector1 test to use flight data by @melanieclarke in #8687
• don't build for python 3.13 by @braingram in #8691
• update test to allow easier deprecation of ignore_version_mismatch by @braingram in #8693
• [SCSB-169] add user input to specify CRDS_CONTEXT by @zacharyburnett in #8702
• [SCSB-170] pin Python<3.13 by @zacharyburnett in #8703
• update dep for stcal to released version by @braingram in #8706
• TST: Use photutils nightly wheel by @pllim in #8701
• Documentation typo by @tapastro in #8700
• bump stpipe by @braingram in #8713
• Update log messages containing newlines by @melanieclarke in #8696
• Fix a typo in load_custom_wcs by @izkgao in #8698
• JP-3702: Fix filenames for level3 NIRSpec by @melanieclarke in #8699
• Add changelog to docs by @braingram in #8716
• JP-3547: Fix MIRI array sizing for multiple inputs and pixel ratio != 1 by @melanieclarke in #8727
• JP-3719: Fix names for intermediate spectral outlier detection files by @melanieclarke in #8735
• JP-3649 Fix cube build error when called from mrs_imatch and add deprecated warning for mrs_imatch by @jemorrison in #8728
• JP-3727: changed psfalign product from quadmodel to cubemodel by @emolter in #8747
• JP-3690: Switch from ModelContainer to ModelLibrary for image3 pipeline by @emolter in #8683
• Update regression tests to remove missing files from tests by @tapastro in #8730
• JP-3570: Match NaNs and DO_NOT_USE flags by @melanieclarke in #8557
• update pull request checklist by @zacharyburnett in #8670
• JP-3729: log version and crds context at end of step/pipeline runs by @braingram in #8760
• JP-3730: Re-enable saving of blot models during outlier detection by @emolter in #8758
• Revert "JP-3729: log version and crds context at end of step/pipeline runs" by @braingram in #8768
• JP-3731: Update association path warning message. by @drlaw1558 in #8752
• JP-3729: report jwst version at end of Step.run by @braingram in #8769
• JP-3654: NSClean subarray speedup by @t-brandt in #8745
• JP-3738: Subtract pedestal dark for MIRI MRS when constructing selfcal minimum by @drlaw1558 in #8771
• JP-3669: 'OLS' Conditional Read Noise Recalculation for CHARGELOSS by @kmacdonald-stsci in #8697
• JP-3743: Make outlier detection respect weights for in-memory models by @emolter in #8777
• JP-3701: Blend models by @braingram in #8759
• Remove multiline logger by @melanieclarke in #8781
• rename variable to silence sonarscan by @braingram in #8784
• JP-3639: Implement 1/f noise correction for ramp data by @melanieclarke in #8669
• JP-3551: Exclude overlapping background candidates by @melanieclarke in #8744
• Fixed filename conflicts in badpix_selfcal test by @emolter in #8792
• allow stdatamodels 2.1.0 by @braingram in #8797
• adjust tolerances for coron registration by @braingram in #8717
• JP-3733 remove setting pixel_replace.save to True in calwebb_spec3 by @jemorrison in #8765
• JP-3489: Update association expname docs by @melanieclarke in #8789
• JP-3667: Run nsclean step on imprint and background association members by @hayescr in #8786
• Fix output collisions in clean_flicker_noise tests by @melanieclarke in #8805
• pin stcal>=1.9.0,<1.10.0 by @zacharyburnett in #8808
• JP-3658: JWST Accommodation of the Ramp Fitting Likelihood Algorithm by @kmacdonald-stsci in #8631
• JP-3593: 2nd group saturation part 2 by @drlaw1558 in #8731
• JP-3305: New association candidate type to group mosaic tiles across targets by @tapastro in #8798
• Update citations file for build 11.1 by @nden in #8807
• JP-3564: Rebase nrs deepcopy by @nden in #8793
• JP-3667: Add safeguards for NSClean on background/imprint members by @melanieclarke in #8809
• JP-3364 allow wcs shifts for IFU individual exposures in cube_build by @jemorrison in #8720
• JP-3695: Clean up unnecessary copies by @penaguerrero in #8676
• JP-3588: Use Pastasoss datamodel for NIRISS SOSS transform solution by @tapastro in #8763
• Update coron tests for numpy 2 compatibility by @melanieclarke in #8812
• update metadata for release 1.16.0 by @zacharyburnett in #8810

New Contributors

• @AlexKurek made their first contribution in #8630
• @guspan-tanadi made their first contribut...

JWST 1.15.1 (DMS build B11.0rc2)

What's Changed

• fix ruff style check by @braingram in #8615
• add 1.14.1 release to README table by @zacharyburnett in #8617
• minor fixes to outlier detection tso unit test by @braingram in #8623
• metadata for release 1.15.1 (B11.0rc2) by @zacharyburnett in #8629

Full Changelog: 1.15.0...1.15.1

JWST 1.14.1

Important

This is a PyPI-only release; the only change from 1.14.0 is to pin Numpy below 2.0

What's Changed

• Pin numpy<2.0 in 1.14.0 release branch, to allow RTD to build by @jhunkeler in #8566

Full Changelog: 1.14.0...1.14.1

JWST 1.15.0 (DMS build B11.0rc1)

What's Changed

• remove uint8 data types by @mwregan2 in #8377
• JP-3574: fix stage 2 pipeline steps not respecting output_file parameter by @emolter in #8368
• JP-3554: Add MSA meta data file docs by @hbushouse in #8399
• JP-3590: Fix config_asdf doc entry by @drlaw1558 in #8406
• JP-3494: write tweakreg source catalogs into user-specified output_dir by @emolter in #8386
• JP-3151: Don't make associations for NRS2 IFU if detector not illuminated by @stscirij in #8395
• JP-3518: Match imprint and science association members by mosaic and dither position by @tapastro in #8410
• JP-3589: fixed deprecated code from numpy 2.0 release by @emolter in #8415
• JP-3585: remove deprecated datamodel types by @emolter in #8388
• JP-3288 use DQ plane in residual_fringe code by @jemorrison in #8381
• JP-3150: skip extract1d for NIRISS SOSS data in F277W filter by @emolter in #8275
• Revert 8305 by @braingram in #8419
• JP-2943: add asn_id to outlier_i2d filename by @braingram in #8418
• remove global multiprocessing.set_start_method by @braingram in #8343
• JP-3491: Modify MIRI LRS WCS mapping code by @drlaw1558 in #8411
• JP-3543: Allow alternate resampling weight type in outlier detection by @melanieclarke in #8290
• Remove configuration for non-existant schema tests by @braingram in #8366
• Fix a bug in how a image group name is determined by @mcara in #8426
• JP-3587: Clean up NIRSpec IFU flat field SCI/ERR/DQ flagging by @drlaw1558 in #8385
• JP-2980 Documentation improvement for multiprocessing: a script which spawns processes on import will cause system failure by @penaguerrero in #8408
• JP-3463: Add log message to dark step by @drlaw1558 in #8425
• bump scipy lower pin to fix oldest deps by @braingram in #8441
• Fix miri avg_dark regtest by @hbushouse in #8446
• JP-3606: Outlier detection cleanup by @braingram in #8438
• limit rotation test to 10x the angular repeatability by @braingram in #8456
• add workflow dispatch trigger to ci by @braingram in #8455
• JP-3605: Change default value for abs_separation in the tweakreg step by @mcara in #8445
• JP-3436 Empty wavelength array in s2d products by @penaguerrero in #8374
• ensure extension modules are present in built wheel by @zacharyburnett in #8462
• JP-3601: Fix background interval edge case by @melanieclarke in #8433
• JP-3569: Update variance handling in resample step by @melanieclarke in #8437
• allow ami_analyze step to run on cal files by @braingram in #8451
• JP-2075: fixed flux scaling issues in wfss_contam by @emolter in #8416
• JP-3609: Change treatment of MIRI MRS values with no photom info by @drlaw1558 in #8453
• JP-3612: Fix MOS background slit source position by @melanieclarke in #8461
• clarify checklist in PR template by @braingram in #8466
• JP-3613: Update error arrays to match NaN in data by @melanieclarke in #8463
• JP-3595: handling for NIRCam GRISM Time Series Pointing offset SR by @emolter in #8449
• JP-3604: Fix possible crashes in the alignment to abs catalog by @mcara in #8450
• JP-3616: Fix NIRSpec FS spec3 slit name by @melanieclarke in #8470
• remove calls to Step.closeout in tests by @braingram in #8428
• JP-3311: OutlierDetectionStep producing extraneous outlier_i2d files by @penaguerrero in #8464
• Regression test for JP-3604 by @nden in #8477
• adding tests for changes in JP-3311 and minor fixes by @penaguerrero in #8481
• JP-3603: reorder tweakreg to reduce iterations through models by @braingram in #8424
• Fix failure in niriss tweakreg test by @mcara in #8489
• JP-3625: Switch to IRAF starfinder default by @drlaw1558 in #8487
• JP-3614: relaxed tolerance for coron unit test by @emolter in #8490
• JP-3470: Add ifu covariance scaling to extract1d by @drlaw1558 in #8457
• JP-3121: Updating JWST Ramp Fit Code to Work with New C Extension by @kmacdonald-stsci in #8355
• JP-3632: Change the Spec of Ramp Fitting to Select Algorithm by @kmacdonald-stsci in #8503
• bump stcal to recent 1.7.1 release by @zacharyburnett in #8505
• remove hard-coded reference file that uses grp path by @braingram in #8507
• JP-3281: Change resampling defaults to NaN padding instead of INDEF by @drlaw1558 in #8488
• use doubles for filter values used with fft in refpix by @braingram in #8512
• JP-3566 Move pixel replace before resample/cube build by @jemorrison in #8409
• JP-3637: Add error propagation during IFU annular background subtraction by @drlaw1558 in #8515
• JP-3584: Use rolling window median for TSO outlier detection by @emolter in #8473
• JP-3624: Fix a source of errors in resampled spec WCS by @mcara in #8511
• JP-2922: Use new source_id syntax for level-3 products by @hbushouse in #8442
• JP-3500 Create WFSS Pure-Parallel associations by @stscieisenhamer in #8528
• Add a check for separation and tolerance in tweakreg by @mcara in #8476
• JP-2922: Minor fixes for MSA source names by @melanieclarke in #8533
• JP-3629: Add new non-header keywords in local pool generator by @melanieclarke in #8508
• JP-3641: Fix error propagation for combine_1d by @melanieclarke in #8520
• JP-3642: Fix aperture correction to variance arrays by @ianyuwong in #8530
• JP-3643: Add background error propagation for non-IFU spectral extraction by @ianyuwong in #8532
• JP-3513: Remove warning about inaccurate errors by @penaguerrero in #8258
• remove name_format usage in wfs_combine by @braingram in #8539
• JP-3330: Add NIRSpec wavelength corrections to slit WCS by @hayescr in #8376
• Fix MIRI LRS spec3 regtest setup by @hbushouse in #8543
• JP-3567: SIP coefficient accuracy and consistency by @melanieclarke in #8529
• JP-3173: Add NIRSpec optical path constraints for TSO associations by @melanieclarke in #8537
• JP-3447: Interpolate errors for replaced pixels by @melanieclarke in #8504
• JP-2682: Discontinue use of drizpars reference file by @hbushouse in #8546
• use stpipe.crds_client.reference_uri_to_cache_path by @braingram in #8542
• Update README for B10.2 install in Ops by @hbushouse in #8556
• JP-3584-bugfix: fixed failed save for intermediate (median) files by @emolter in #8555
• JP-3653: Nsclean speedup by @t-brandt in #8547
• JP-3635: Account for pixel area ratio in outlier detection blotting by @emolter in #8553
• JP-3617: Add check for uncalibrated filters for NIRISS SOSS by @melanieclarke in #8549
• JP-3581: badpix_selfcal step by @emolter in #8500
• pin numpy<2 by @braingram in https://github.com/spacetel...

JWST 1.14.0 (DMS build B10.2rc1)

What's Changed

• Reset requirements-sdp.txt after release by @jhunkeler in #8175
• fixed docstring typo; testing PR workflow by @emolter in #8178
• JP-3505: Update ASN rules for NRS MOS compromise dither patterns by @hbushouse in #8184
• JP-3501: Turn off emicorr by default by @drlaw1558 in #8171
• JP-3503: Update outlier detection docs by @drlaw1558 in #8177
• JP-3504: Bugfix for MRS 1d residual fringe correction by @drlaw1558 in #8180
• Update sregion at the end of TweakRegStep by @izkgao in #8158
• JP-3228: Remove 'grow' param from outlier_detection by @hbushouse in #8190
• remove sphinx-asdf requirement by @braingram in #8196
• Update RTD installation instructions by @hbushouse in #8200
• JP-3088 updated bunit_data for the top multislit model by @jemorrison in #8189
• JP-3510: Use all groups to flag bad IRS2 reference pixels by @melanieclarke in #8197
• JP-3238: Include dispersion factor in PHOTOM correction for NRC grism by @stscirij in #8207
• JP-3509: Cut cube collapse for autocentroiding short of 26 microns by @drlaw1558 in #8199
• JP-2259: Tweakreg source finding by @emolter in #8203
• require photutils 1.5+ by @braingram in #8211
• Update min version of tweakwcs to 0.8.6 by @hbushouse in #8216
• JP-3510: Flag bad refpix within integrations separately by @melanieclarke in #8214
• Add a warning message in Log to cube_build if not valid data is found on detector by @jemorrison in #8220
• switch to sphinx rtd theme by @braingram in #8224
• update regtest conftest for pytest 8 by @braingram in #8245
• Silence resample test warning by using non-zero data by @jdavies-st in #8251
• JP-3515: Spec2Pipeline turns off NSClean for BOTS by @penaguerrero in #8256
• JP-3532: MRS 1d residual fringe treatment of negative values by @drlaw1558 in #8261
• JP-3325: bypass extract1d for SOSS observations in FULL subarray by @emolter in #8225
• JP-3247: Retrieve pixel area from AREA reference file by @penaguerrero in #8187
• remove unused test data files by @braingram in #8266
• Release metadata for 1.13.4 by @jhunkeler in #8271
• JP-3488 Input files to outlier_detection accidentally deleted by @penaguerrero in #8263
• JP-3223: Extract_2d 'slit_name' parameter fails for NRS_MSASPEC slits by @penaguerrero in #8272
• JP-3499: Handle too much masked data for NIRISS SOSS extractions in extract_1d by @emolter in #8265
• Update stcal requirement to 1.6.0 by @hbushouse in #8276
• Fix: models_grouped always return opened data models by @mcara in #8191
• Use the same iscale value for resampling science data and variance arrays by @izkgao in #8159
• JP-3483: fix atoca failures due to sparse matrix solver by @emolter in #8273
• Fix NIRISS imaging regression test by @hbushouse in #8277
• use tuple of exception classes instead of or by @zacharyburnett in #8267
• JP-3525: Update jump and ramp_fitting docs to merge with stcal docs by @hbushouse in #8253
• Add SlicedLowLevelWCS support to reproject and fix a bug by @izkgao in #8172
• JP-3290 Isolate candidate processing into their own pools by @stscieisenhamer in #8227
• Convert tweakreg segmentation connectivity to integer by @jdavies-st in #8309
• JP-3539: replace all instances of deprecated scipy interp2d by @emolter in #8291
• Suppress warnings about NaNs in input data from TweakRegStep by @jdavies-st in #8308
• Add option to preserve reference pixels after IRS2 processing by @melanieclarke in #8255
• Don't test specific log formatting for spec by @jdavies-st in #8317
• JP-3423: fixed array shape mismatch in pixel_replace mingrad algorithm by @emolter in #8312
• increase stdatamodels pins by @braingram in #8322
• Delete jump step unit test that has been moved to STCAL by @mwregan2 in #8319
• JP-3540: remove migrate_data and move_wcs scripts by @emolter in #8321
• JP-3437: Address alternating column noise for NIRSpec IRS2 by @melanieclarke in #8143
• pin pytest <8.1 by @braingram in #8328
• JP-3553: Update background step handling of multi-ints exposures by @hbushouse in #8326
• replace check_memory_allocation in resample by @braingram in #8324
• import bytes2human directly from stdatamodels by @braingram in #8325
• JP-2090: Update set_velocity_aberration to use DataModel by @emolter in #8285
• JP-3465: Use TMEASURE in resample step by @emolter in #8212
• JP-3492 LRS spectral images contain pixels with NaN values and DQ = 0 by @penaguerrero in #8292
• bump gwcs pins by @braingram in #8337
• JP-3560: Updating CHARGELOSS Flagging by @kmacdonald-stsci in #8336
• JP-3088 fix bunit_data and bunit_err for MOS data products by @jemorrison in #8294
• JP-3541: fixed tweakreg step KeyError due to empty gaia catalog by @emolter in #8334
• JP-3463: Add average_dark_current handling to dark_current step by @tapastro in #8302
• Jp-3169 store aperture location in FITS header by @jemorrison in #8278
• Remove tophat kernel as an available option for resample kernel by @mcara in #8364
• JP-3534 update to Sky Match docs by @jemorrison in #8356
• update load_local_pkg exclude regex with regtest pattern by @braingram in #8350
• JP-3552: use tmp_path instead of tmpdir, enable no:legacypath as a tox factor by @emolter in #8327
• JP-3445: Exclude NINTS=1 from SOSS TSO3 associations by @hbushouse in #8359
• Remove upper pytest pin, switch globals use to fixture in stpipe test by @braingram in #8347
• JP-2943:Level_3 error: cannot reshape array in image3 pipeline by @stscirij in #8305
• JP-3533 Update emicorr to run on FAST mode MIRI data by @penaguerrero in #8270
• JP-3527 Update to docs for IFU outlier detection by @jemorrison in #8360
• Fix bug in emicorr logic for finding matching ref file info by @penaguerrero in #8375
• JP-3352 update residual fringe documentation by @jemorrison in #8371
• JP-3550: Jump multi int by @mwregan2 in #8304
• JP-3562: Extend snowball core by @mwregan2 in #8303
• JP-3546: fix deprecations and improve warning filtering by @emolter in #8320
• [SCSB-145] require Python 3.10 by @zacharyburnett in #8365
• update metadata for 1.14.0 by @zacharyburnett in #8380
• JP-3153: post-commissioning AMI3 updates by @rcooper295 in #7862
• fix fixture for closedfile regtest by @braingram in #8387
• fix issues flagged by SonarQube by @zacharyburnett in #8391
• update metadata for release by @zacharyburnett in #8396

New Contributors

• @emolter made their first contribution in https://github.com/sp...

JWST 1.13.4

What's Changed

• metadata for 1.13.4 by @zacharyburnett in #8222
• JP-3501: Turn off emicorr by default by @drlaw1558 in #8171

New Contributors

• @drlaw1558 made their first contribution in #8171

Full Changelog: 1.13.3...1.13.4

JWST 1.13.3 (DMS build B10.1rc4)

What's Changed

• RampFitStep - accept integer values for maximum_cores by @izkgao in #8123
• Documentation updates by @hbushouse in #8156
• Update README to exclude Python 3.12 from supported versions. by @nden in #8161

New Contributors

• @izkgao made their first contribution in #8123

Full Changelog: 1.13.2...1.13.3

JWST 1.13.2 (DMS build B10.1rc3)

What's Changed

• JP-3248 MIRI Subarrays 390 Hz EMI bug fix 3 by @penaguerrero in #8151
• reducing running time for EMICORR step by @penaguerrero in #8152
• update metadata for 1.13.2 by @zacharyburnett in #8155

Full Changelog: 1.13.1...1.13.2

JWST 1.13.1 (DMS build B10.1rc2)

What's Changed

• Fix a typo in version_commit string by @nden in #8145
• add unit test to confirm step and pipeline all by @braingram in #8140
• JP-3248: MIRI Subarrays 390 Hz EMI bug fix by @penaguerrero in #8147
• JP-3248 MIRI Subarrays 390 Hz EMI bug fix 2 by @penaguerrero in #8148
• update metadata for 1.13.1 by @zacharyburnett in #8150

Full Changelog: 1.13.0...1.13.1