Update pytest requirement from ^7.4.2 to >=7.4.2,<9.0.0 #46
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| jobs: | |
| formatting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out the code | |
| uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install poetry | |
| run: pip install poetry | |
| - name: Determine dependencies | |
| run: poetry lock | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: poetry | |
| - name: Install dependencies | |
| run: | | |
| poetry install | |
| - name: Check formatting | |
| run: poetry run black --check . | |
| linting: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out the code | |
| uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install poetry | |
| run: pip install poetry | |
| - name: Determine dependencies | |
| run: poetry lock | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: poetry | |
| - name: Install dependencies | |
| run: | | |
| poetry install | |
| - name: Check code | |
| run: poetry run flake8 | |
| testing: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install poetry | |
| run: pip install poetry | |
| - name: Determine dependencies | |
| run: poetry lock | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: poetry | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y golang | |
| poetry install | |
| - name: Install funnel | |
| run: | | |
| wget https://github.com/ohsu-comp-bio/funnel/releases/download/0.10.1/funnel-linux-amd64-0.10.1.tar.gz | |
| tar -xzf funnel-linux-amd64-0.10.1.tar.gz | |
| - name: Start funnel | |
| run: | | |
| (./funnel server run --config tests/funnel.cfg 2> funnel.log) & | |
| - name: Test funnel server | |
| run: | | |
| ./funnel examples hello-world > hello-world.json | |
| ./funnel task create hello-world.json | |
| - name: Run pytest | |
| run: poetry run coverage run -m pytest tests/tests.py | |
| - name: Run Coverage | |
| run: poetry run coverage report -m |