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feat: Improve datavzrd tables #93
Commits on Apr 24, 2024
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Commits on Jun 5, 2024
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Add meta comparisons and tidy up
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Remove _se from confidence interval
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Commits on Jun 7, 2024
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Update spia columns if no results produced
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Compute gene_ratio before selecting all columns
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Commits on Jun 24, 2024
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Commits on Jun 27, 2024
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Change display of q/pvals, remove NaN rows in diffexp
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Merge branch 'locotact_p18' of github.com:snakemake-workflows/rna-seq…
…-kallisto-sleuth into locotact_p18
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Update workflow/scripts/postprocess_diffexp.py
Co-authored-by: David Laehnemann <[email protected]>
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Commits on Jun 28, 2024
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Merge branch 'locotact_p18' of github.com:snakemake-workflows/rna-seq…
…-kallisto-sleuth into locotact_p18
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Commits on Jul 4, 2024
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fix: postprocess for all diffexp levels, use proper table for constra…
…ining matrix, sort in the right order
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Commits on Jul 8, 2024
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Merge branch 'locotact_p18' of github.com:snakemake-workflows/rna-seq…
…-kallisto-sleuth into locotact_p18
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Ise pd.join instead of self-implementing it
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sort diffexp bei signd_pi_val prefix only
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Commits on Jul 9, 2024
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Change meta comparison description
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Chanke links between datavzrd views
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Merge branch 'locotact_p18' of github.com:snakemake-workflows/rna-seq…
…-kallisto-sleuth into locotact_p18
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Improve description of meta comps in config
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Add meta comparisons to README
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Add meta_comparisons to CI config
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Commits on Jul 11, 2024
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Add meta comparisons to three prime test config
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Commits on Jul 18, 2024
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Cahnge path of meta_comp in config
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Merge branch 'locotact_p18' of github.com:snakemake-workflows/rna-seq…
…-kallisto-sleuth into locotact_p18
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Commits on Jul 22, 2024
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Do own pca in order to allow scaling
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make config setting for excluding nas in pca
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Sort tables and show sorting in description
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show scale in both plots in go meta comp
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Insert dealing with meta comp description
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Add linkouts to tables in meta_comp
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Show signed_pi_val for diffexp
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Link genes and pathways ind meta comps
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Show scale on right plot of meta comp
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Merging on go enrichment wrong (quick fix)
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Merge branch 'locotact_p18' of https://github.com/snakemake-workflows…
…/rna-seq-kallisto-sleuth into locotact_p18
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Merge branch 'locotact_p18' of https://github.com/snakemake-workflows…
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Merge branch 'locotact_p18' of github.com:snakemake-workflows/rna-seq…
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Merge branch 'locotact_p18' of https://github.com/snakemake-workflows…
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Commits on Aug 12, 2024
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Change heading level of meta comparision in readme
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Merge branch 'locotact_p18' of https://github.com/snakemake-workflows…
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Include samples in workflow.rst
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Remove outcommented caption for linting
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Merge branch 'locotact_p18' of github.com:snakemake-workflows/rna-seq…
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Commits on Aug 13, 2024
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Apply suggestions from code review
Apply Davids suggestions for better code quality Co-authored-by: David Laehnemann <[email protected]>
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Co-authored-by: David Laehnemann <[email protected]>
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