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do not create pi-value sorting for genes-aggregated (no beta-values a…
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…nd no pi-value)
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johanneskoester committed Jul 5, 2024
1 parent 354aaac commit e0d4b76
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion workflow/rules/datavzrd.smk
Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,7 @@ rule postprocess_go_enrichment:


# Postprocessing Differential Expression Data
# Does not work for level = genes-aggregated since it does not contain beta values.
rule postprocess_diffexp:
input:
genes_representative="results/tables/diffexp/{model}.{level}.diffexp.tsv",
Expand Down Expand Up @@ -80,7 +81,7 @@ rule diffexp_datavzrd:
# optional files required for rendering the given config
logcount_matrix="results/tables/logcount-matrix/{model}.logcount-matrix_postprocessed.tsv",
transcripts="results/tables/diffexp/{model}.transcripts.diffexp_postprocessed.tsv",
genes_aggregated="results/tables/diffexp/{model}.genes-aggregated.diffexp_postprocessed.tsv",
genes_aggregated="results/tables/diffexp/{model}.genes-aggregated.diffexp.tsv",
genes_representative="results/tables/diffexp/{model}.genes-representative.diffexp_postprocessed.tsv",
volcano_plots="results/plots/interactive/volcano/{model}.vl.json",
output:
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