Skip to content

Commit

Permalink
Add meta comparisons to three prime test config
Browse files Browse the repository at this point in the history
  • Loading branch information
Addimator committed Jul 11, 2024
1 parent 5763ca8 commit 4116490
Showing 1 changed file with 17 additions and 0 deletions.
17 changes: 17 additions & 0 deletions .test/three_prime/config/config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -98,6 +98,23 @@ enrichment:
# the species specified by resources -> ref -> species above
pathway_database: "panther"

meta_comparisons:
# comparison is only run if set to `true`
activate: false
# Define here the coparisons under interest
comparisons:
# Define any name for comparison
model_X_vs_model_Y:
items:
# Define the two underlying models for the comparison. The models must be defined in the diffexp/models in the config
- label: X # Arbitrary label
model: model_X # Must match a diffexp model from config
- label: Y # Arbitrary label
model: model_Y # Must match a diffexp model from config
desc: |
Comparison between model_X and model_Y effect.
label: model_X vs. model_Y effect

bootstrap_plots:
# desired false discovery rate for bootstrap plots, i.e. a lower FDR will result in fewer boxplots generated
FDR: 0.01
Expand Down

0 comments on commit 4116490

Please sign in to comment.