move scenarios to workflow/resources/

snakemake-workflows · May 11, 2023 · a93090e · a93090e
1 parent 8b9e67d
commit a93090e
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Showing 4 changed files with 3 additions and 3 deletions.
diff --git a/...s/scenarios/illumina_circle_scenario.yaml → ...s/scenarios/illumina_circle_scenario.yaml b/...s/scenarios/illumina_circle_scenario.yaml → ...s/scenarios/illumina_circle_scenario.yaml
diff --git a/...s/scenarios/nanopore_circle_scenario.yaml → ...s/scenarios/nanopore_circle_scenario.yaml b/...s/scenarios/nanopore_circle_scenario.yaml → ...s/scenarios/nanopore_circle_scenario.yaml
diff --git a/...opore_illumina_joint_circle_scenario.yaml → ...opore_illumina_joint_circle_scenario.yaml b/...opore_illumina_joint_circle_scenario.yaml → ...opore_illumina_joint_circle_scenario.yaml
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
@@ -175,11 +175,11 @@ def scenario_name(wildcards):
 def get_scenario(wildcards):
     scenario = scenario_name(wildcards)
     if scenario == "nanopore_only":
-        return "resources/scenarios/nanopore_circle_scenario.yaml"
+        return workflow.source_path("../resources/scenarios/nanopore_circle_scenario.yaml")
     elif scenario == "illumina_only":
-        return "resources/scenarios/illumina_circle_scenario.yaml"
+        return workflow.source_path("../resources/scenarios/illumina_circle_scenario.yaml")
     elif scenario == "nanopore_with_illumina_support":
-        return "resources/scenarios/nanopore_illumina_joint_circle_scenario.yaml"
+        return workflow.source_path("../resources/scenarios/nanopore_illumina_joint_circle_scenario.yaml")
     else:
         raise ValueError(f"Unknown scenario: {scenario}")