Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

[ENH] Creating a new Bayesian Regressor with PyMC as a backend #358

Open
wants to merge 48 commits into
base: main
Choose a base branch
from
Open

[ENH] Creating a new Bayesian Regressor with PyMC as a backend #358

wants to merge 48 commits into from

Commits on May 22, 2024

  1. Added pymc as an optional dependency in pyproject.toml

    Ubuntu committed May 22, 2024
    Configuration menu
    Copy the full SHA
    8bfa908 View commit details
    Browse the repository at this point in the history

Commits on May 23, 2024

  1. Added WIP Bayesian Linear Regression code and notebook

    @meraldoantonio
    meraldoantonio committed May 23, 2024
    Configuration menu
    Copy the full SHA
    4634059 View commit details
    Browse the repository at this point in the history

  2. Added comments

    @meraldoantonio
    meraldoantonio committed May 23, 2024
    Configuration menu
    Copy the full SHA
    be4d12a View commit details
    Browse the repository at this point in the history

Commits on May 24, 2024

  1. Changed MutableData to Data

    @meraldoantonio
    meraldoantonio committed May 24, 2024
    Configuration menu
    Copy the full SHA
    054a7df View commit details
    Browse the repository at this point in the history

Commits on May 31, 2024

  1. Fixed typo in pyproject.toml

    @meraldoantonio
    meraldoantonio committed May 31, 2024
    Configuration menu
    Copy the full SHA
    eb54e18 View commit details
    Browse the repository at this point in the history

Commits on Jun 6, 2024

  1. BayesianLinearRegressor fitted to skpro template, fit and predict work

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    eebfb67 View commit details
    Browse the repository at this point in the history

  2. Finished predict_proba method in BayesianLinearRegressor

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    2bacfa0 View commit details
    Browse the repository at this point in the history

  3. Fixed indexing bugs

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    1a373ea View commit details
    Browse the repository at this point in the history

  4. Deleted template comments

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    3f02932 View commit details
    Browse the repository at this point in the history

  5. Added an example in the docstring

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    4b7cca4 View commit details
    Browse the repository at this point in the history

  6. Added a visualize_model method

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    b0f89c4 View commit details
    Browse the repository at this point in the history

  7. Added mutability=True in pm.Data

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    41857d1 View commit details
    Browse the repository at this point in the history

  8. Pinned the version of pymc in pyproject.toml to 5.15.0 (earlier versi… 

    …ons have diff. behaviors wrt tensor mutability)
    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    a3b4c64 View commit details
    Browse the repository at this point in the history

  9. Removed mutable=True in pm.Data which is to be deprecated

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    bea9481 View commit details
    Browse the repository at this point in the history

  10. Added get_prior method

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    0016acf View commit details
    Browse the repository at this point in the history

  11. Added get posterior method

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    c43f836 View commit details
    Browse the repository at this point in the history

  12. Added methods to return prior and posterior summary statistics

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    e4d0933 View commit details
    Browse the repository at this point in the history

  13. Added plot_ppc method

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    a150c5c View commit details
    Browse the repository at this point in the history

  14. Deleted old sample notebook

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    b0b4bd1 View commit details
    Browse the repository at this point in the history

  15. Added example notebook

    @meraldoantonio
    meraldoantonio committed Jun 6, 2024
    Configuration menu
    Copy the full SHA
    45698aa View commit details
    Browse the repository at this point in the history

Commits on Jun 13, 2024

  1. Updated experiment to also look into posterior predictive

    Meraldo Antonio committed Jun 13, 2024
    Configuration menu
    Copy the full SHA
    63968db View commit details
    Browse the repository at this point in the history

  2. Formatting

    Meraldo Antonio committed Jun 13, 2024
    Configuration menu
    Copy the full SHA
    ca0621d View commit details
    Browse the repository at this point in the history

Commits on Jun 27, 2024

  1. Merge remote-tracking branch 'upstream/main' into pymc_dev

    Meraldo Antonio committed Jun 27, 2024
    Configuration menu
    Copy the full SHA
    a511765 View commit details
    Browse the repository at this point in the history

  2. Changed the prior for variance to inverse gamma for consisntency with… 

    … conjugate prior
    Meraldo Antonio committed Jun 27, 2024
    Configuration menu
    Copy the full SHA
    d1521fb View commit details
    Browse the repository at this point in the history

  3. Formatting

    Meraldo Antonio committed Jun 27, 2024
    Configuration menu
    Copy the full SHA
    6c42e5f View commit details
    Browse the repository at this point in the history

Commits on Aug 29, 2024

  1. Merge remote-tracking branch 'upstream/main' into pymc_dev

    Meraldo Antonio committed Aug 29, 2024
    Configuration menu
    Copy the full SHA
    0bb0757 View commit details
    Browse the repository at this point in the history

  2. Used pymc-marketing prior class, streamlined sampling

    Meraldo Antonio committed Aug 29, 2024
    Configuration menu
    Copy the full SHA
    058257c View commit details
    Browse the repository at this point in the history

  3. Modified the notebook to fit with the reworked class

    Meraldo Antonio committed Aug 29, 2024
    Configuration menu
    Copy the full SHA
    ab3bb70 View commit details
    Browse the repository at this point in the history

Commits on Aug 30, 2024

  1. Updated sampling and notebook

    Meraldo Antonio committed Aug 30, 2024
    Configuration menu
    Copy the full SHA
    050322f View commit details
    Browse the repository at this point in the history

  2. removed bayesian.py

    Meraldo Antonio committed Aug 30, 2024
    Configuration menu
    Copy the full SHA
    83dc8f7 View commit details
    Browse the repository at this point in the history

  3. Renamed module

    Meraldo Antonio committed Aug 30, 2024
    Configuration menu
    Copy the full SHA
    f780155 View commit details
    Browse the repository at this point in the history

  4. Added self as contributor

    Meraldo Antonio committed Aug 30, 2024
    Configuration menu
    Copy the full SHA
    c58d437 View commit details
    Browse the repository at this point in the history

  5. unlocked pymc version

    Meraldo Antonio committed Aug 30, 2024
    Configuration menu
    Copy the full SHA
    e1dd494 View commit details
    Browse the repository at this point in the history

Commits on Sep 27, 2024

  1. Updated notebook for multiple predictors and prior elicitation

    Meraldo Antonio committed Sep 27, 2024
    Configuration menu
    Copy the full SHA
    8b4f92a View commit details
    Browse the repository at this point in the history

  2. Allowed multivariate regression and re-training

    Meraldo Antonio committed Sep 27, 2024
    Configuration menu
    Copy the full SHA
    5a03d3e View commit details
    Browse the repository at this point in the history

Commits on Oct 4, 2024

  1. Removed notebook from this branch and pull request

    Meraldo Antonio committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    663b8e0 View commit details
    Browse the repository at this point in the history

  2. Removed the dictionary piping syntax and python 3.10 requirements

    Meraldo Antonio committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    89c0f6d View commit details
    Browse the repository at this point in the history

  3. Removed the dictionary piping syntax and python 3.10 requirements

    Meraldo Antonio committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    55249f4 View commit details
    Browse the repository at this point in the history

Commits on Oct 5, 2024

  1. Commented out graphviz visualization fucntion

    Meraldo Antonio committed Oct 5, 2024
    Configuration menu
    Copy the full SHA
    434f086 View commit details
    Browse the repository at this point in the history

  2. Locked Arviz version

    Meraldo Antonio committed Oct 5, 2024
    Configuration menu
    Copy the full SHA
    5c886b1 View commit details
    Browse the repository at this point in the history

  3. Downgraded scipy version

    Meraldo Antonio committed Oct 5, 2024
    Configuration menu
    Copy the full SHA
    b4a2e4a View commit details
    Browse the repository at this point in the history

  4. modified scipy version to 1.12 in project toml due to arviz bug

    Meraldo Antonio committed Oct 5, 2024
    Configuration menu
    Copy the full SHA
    21102b2 View commit details
    Browse the repository at this point in the history

  5. Uncommented visualize model

    Meraldo Antonio committed Oct 5, 2024
    Configuration menu
    Copy the full SHA
    0b3408d View commit details
    Browse the repository at this point in the history

Commits on Oct 6, 2024

  1. Removed scipy lock from pyproject toml and added to BayesianLienarReg… 

    …ressor dependencies
    Meraldo Antonio committed Oct 6, 2024
    Configuration menu
    Copy the full SHA
    535ca75 View commit details
    Browse the repository at this point in the history

Commits on Oct 8, 2024

  1. Locked Python and Arviz version

    Meraldo Antonio committed Oct 8, 2024
    Configuration menu
    Copy the full SHA
    a3aea79 View commit details
    Browse the repository at this point in the history

Commits on Oct 9, 2024

  1. Added default value of None to prior_config and sampler_config

    Meraldo Antonio committed Oct 9, 2024
    Configuration menu
    Copy the full SHA
    fd4d5fd View commit details
    Browse the repository at this point in the history

Commits on Oct 10, 2024

  1. Merged main, resolved conflict

    Meraldo Antonio committed Oct 10, 2024
    Configuration menu
    Copy the full SHA
    1f0402e View commit details
    Browse the repository at this point in the history

  2. Locked python version for pymc

    Meraldo Antonio committed Oct 10, 2024
    Configuration menu
    Copy the full SHA
    b7f27aa View commit details
    Browse the repository at this point in the history