Merge pull request #3300 from eseiler/fix/sam_file_output #174
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| # SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin | |
| # SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik | |
| # SPDX-License-Identifier: CC0-1.0 | |
| name: Cookbook | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| concurrency: | |
| group: update-cookbook-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -Eexuo pipefail {0} | |
| jobs: | |
| update-cookbook: | |
| name: Update Cookbook | |
| runs-on: ubuntu-22.04 | |
| if: github.repository_owner == 'seqan' | |
| timeout-minutes: 15 | |
| steps: | |
| - name: Checkout SeqAn3 | |
| uses: actions/checkout@v4 | |
| with: | |
| token: ${{ secrets.SEQAN_ACTIONS_PAT }} | |
| - name: Import GPG key | |
| uses: crazy-max/ghaction-import-gpg@v6 | |
| with: | |
| gpg_private_key: ${{ secrets.SEQAN_ACTIONS_GPG_KEY }} | |
| passphrase: ${{ secrets.SEQAN_ACTIONS_GPG_PASSPHRASE }} | |
| git_user_signingkey: true | |
| git_commit_gpgsign: true | |
| - name: Update cookbook | |
| run: ./test/scripts/add_snippets_to_cookbook.sh . | |
| - name: Commit changes | |
| uses: EndBug/add-and-commit@v9 | |
| with: | |
| add: ./doc/cookbook/index.md | |
| author_name: seqan-actions[bot] | |
| author_email: [email protected] | |
| message: '[MISC] Update cookbook' |