[DOC] hibf tutorial #53
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| # SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin | |
| # SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik | |
| # SPDX-License-Identifier: CC0-1.0 | |
| name: Coverage | |
| on: | |
| push: | |
| pull_request: | |
| workflow_dispatch: | |
| concurrency: | |
| group: coverage-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: false | |
| env: | |
| SHARG_NO_VERSION_CHECK: 1 | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -Eexuo pipefail {0} | |
| jobs: | |
| build: | |
| name: ${{ matrix.name }} | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: "gcc13" | |
| compiler: "gcc-13" | |
| build: coverage | |
| build_type: Coverage | |
| steps: | |
| # How many commits do we need to fetch to also fetch the branch point? | |
| - name: Get fetch depth | |
| id: fetch_depth | |
| run: echo "depth=$(( ${{ github.event.pull_request.commits }} + 2 ))" >> $GITHUB_OUTPUT | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: ${{ steps.fetch_depth.outputs.depth }} | |
| submodules: false | |
| - name: Setup toolchain | |
| uses: seqan/actions/setup-toolchain@main | |
| with: | |
| compiler: ${{ matrix.compiler }} | |
| ccache_size: 125M | |
| - name: Install CMake | |
| uses: seqan/actions/setup-cmake@main | |
| with: | |
| cmake: 3.21.7 | |
| - name: Install gcovr | |
| run: | | |
| sudo update-alternatives --install /usr/bin/gcov gcov /usr/bin/${CC/gcc/gcov} 100 | |
| pip install gcovr==6.0 | |
| - name: Configure tests | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake .. -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} | |
| make -j2 -k gtest_main yaml-cpp | |
| - name: Build tests | |
| env: | |
| CCACHE_IGNOREOPTIONS: "-fprofile-abs-path" | |
| run: | | |
| ccache -z | |
| cd build | |
| make -j2 -k check | |
| ccache -sv | |
| - name: Generate coverage report | |
| run: | | |
| gcovr --gcov-executable ${{ github.workspace }}/.github/workflows/scripts/gcov.sh \ | |
| --root ${{ github.workspace }}/test/coverage \ | |
| ${{ github.workspace }}/build \ | |
| --filter ${{ github.workspace }}/include \ | |
| --filter ${{ github.workspace }}/src \ | |
| --exclude-lines-by-pattern '^\s*$' \ | |
| --exclude-lines-by-pattern '^\s*};$' \ | |
| --exclude-unreachable-branches \ | |
| --exclude-throw-branches \ | |
| --exclude-noncode-lines \ | |
| -j 2 \ | |
| --xml \ | |
| --output ${{ github.workspace }}/build/coverage_report.xml | |
| - name: Submit coverage build | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ${{ github.workspace }}/build/coverage_report.xml | |
| fail_ci_if_error: false |