ci: add notebooks yaml (#298) #2
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| # atac (missing R notebooks) | ||
| - atac/PeakVI.ipynb | ||
| - atac/PoissonVI.ipynb | ||
| - atac/scbasset_batch.ipynb | ||
| - atac/scbasset.ipynb | ||
| # dev | ||
| - dev/data_tutorial.ipynb | ||
| - dev/model_user_guide.ipynb | ||
| - dev/module_user_guide.ipynb | ||
| # hub | ||
| - hub/cellxgene_census_model.ipynb | ||
| - hub/minification.ipynb | ||
| - hub/scvi_hub_intro_and_download.ipynb | ||
| - hub/scvi_hub_upload_and_large_files.ipynb | ||
| # multimodal (missing R notebooks) | ||
| - multimodal/cite_scrna_integration_w_totalVI.ipynb | ||
| - multimodal/MultiVI_tutorial.ipynb | ||
| - multimodal/totalVI_reference_mapping.ipynb | ||
| - multimodal/totalVI.ipynb | ||
| # quick_start (missing R notebooks) | ||
| - quick_start/api_overview.ipynb | ||
| - quick_start/data_loading.ipynb | ||
| # scrna (missing R notebooks) | ||
| - scrna/amortized_lda.ipynb | ||
| - scrna/AutoZI_tutorial.ipynb | ||
| - scrna/cellassign_tutorial.ipynb | ||
| - scrna/contrastiveVI_tutorial.ipynb | ||
| - scrna/harmonization.ipynb | ||
| - scrna/linear_decoder.ipynb | ||
| - scrna/MrVI_tutorial.ipynb | ||
| - scrna/query_hlca_knn.ipynb | ||
| - scrna/scanvi_fix.ipynb | ||
| - scrna/scarches_scvi_tools.ipynb | ||
| - scrna/scVI_DE_worm.ipynb | ||
| - scrna/seed_labeling.ipynb | ||
| - scrna/tabula_muris.ipynb | ||
| # spatial (missing R notebooks) | ||
| - spatial/cell2location_lymph_node_spatial_tutorial.ipynb | ||
| - spatial/DestVI_tutorial.ipynb | ||
| - spatial/gimvi_tutorial.ipynb | ||
| - spatial/stereoscope_heart_LV_tutorial.ipynb | ||
| - spatial/tangram_scvi_tools.ipynb | ||
| # tuning | ||
| - tuning/autotune_new_model.ipynb | ||
| - tuning/autotune_scvi.ipynb | ||
