run-linux-cuda #4

	name: run-linux-cuda

	on:
	workflow_dispatch:
	inputs:
	notebook-path:
	description: Path to the notebook to run
	required: true
	type: string

	jobs:
	docker:
	runs-on: [self-hosted, Linux, X64, CUDA]

	container:
	image: martinkim0/scvi-tools:py3.11-cu11
	options: --user root --gpus all

	steps:
	- name: Checkout
	uses: actions/checkout@v3

	- name: Install dependencies
	run: \|
	python -m pip install -U scvi-tools[tutorials]

	- name: Install nbconvert
	run: \|
	python -m pip install -U jupyter ipykernel nbconvert

	- name: Install kernel
	run: \|
	python -m ipykernel install

	- name: Run notebook
	run: \|
	python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook-path }}

	- name: Submit pull request with changes
	uses: peter-evans/create-pull-request@v5

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