run-linux-cuda #1
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: run-linux-cuda | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| notebook-path: | |
| description: Path to the notebook to run | |
| required: true | |
| type: string | |
| jobs: | |
| docker: | |
| runs-on: [self-hosted, Linux, X64, CUDA] | |
| container: | |
| image: martinkim0/scvi-tools:ubuntu-latest-mamba-latest-python-3.11-cuda-11 | |
| options: --user root --gpus all | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: | | |
| pip install -U scvi-tools[tutorials] | |
| - name: Install nbconvert | |
| run: | | |
| pip install -U nbconvert | |
| - name: Run notebook | |
| run: | | |
| python -m jupyter nbconvert --execute --inplace ${{ inputs.notebook-path }} | |
| - name: Submit pull request with changes | |
| uses: peter-evans/create-pull-request@v5 |