run notebook (individual) #13
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| name: run notebook (individual) | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| notebook: | |
| description: "Path to the notebook to run" | |
| required: true | |
| type: choice | |
| options: # not including R tutorials currently | |
| - atac/PeakVI.ipynb | |
| - atac/PoissonVI.ipynb | |
| - atac/scbasset_batch.ipynb | |
| - atac/scbasset.ipynb | |
| - dev/data_tutorial.ipynb | |
| - dev/model_user_guide.ipynb | |
| - dev/module_user_guide.ipynb | |
| - hub/cellxgene_census_model.ipynb | |
| - hub/minification.ipynb | |
| - hub/scvi_hub_intro_and_download.ipynb | |
| - hub/scvi_hub_upload_and_large_files.ipynb | |
| - multimodal/cite_scrna_integration_w_totalVI.ipynb | |
| - multimodal/MultiVI_tutorial.ipynb | |
| - multimodal/totalVI_reference_mapping.ipynb | |
| - multimodal/totalVI.ipynb | |
| - quick_start/api_overview.ipynb | |
| - quick_start/data_loading.ipynb | |
| - scrna/amortized_lda.ipynb | |
| - scrna/AutoZI_tutorial.ipynb | |
| - scrna/cellassign_tutorial.ipynb | |
| - scrna/contrastiveVI_tutorial.ipynb | |
| - scrna/harmonization.ipynb | |
| - scrna/linear_decoder.ipynb | |
| - scrna/query_hlca_knn.ipynb | |
| - scrna/scanvi_fix.ipynb | |
| - scrna/scarches_scvi_tools.ipynb | |
| - scrna/scVI_DE_worm.ipynb | |
| - scrna/seed_labeling.ipynb | |
| - scrna/tabula_muris.ipynb | |
| - scrna/MrVI_tutorial.ipynb | |
| - spatial/cell2location_lymph_node_spatial_tutorial.ipynb | |
| - spatial/DestVI_tutorial.ipynb | |
| - spatial/gimvi_tutorial.ipynb | |
| - spatial/stereoscope_heart_LV_tutorial.ipynb | |
| - spatial/tangram_scvi_tools.ipynb | |
| - tuning/autotune_new_model.ipynb | |
| - tuning/autotune_scvi.ipynb | |
| version: | |
| description: "latest/stable/semver/branch" | |
| required: true | |
| type: string | |
| jobs: | |
| notebook: | |
| uses: ./.github/workflows/run_notebook.yaml | |
| with: | |
| notebook: ${{ inputs.notebook }} | |
| version: ${{ inputs.version }} |