Version 0.5

create soft link for -a if file name does not end with fa(sta)? to be compatible with racon

Version 0.4

• automatically set minimap presets from -x
• default options for racon and pilon
• option to restrict pilon polishing to certain regions
• remove ngm support
• don't create bwa index if already existing

Version 0.3

• add option to polish an existing assembly

Version 0.2

• choose different short read mapper for different iterations
• create output directory if not existing
• recognize ~ as $HOME in the path of the second paired file
• catch and resolve error for paired mapping with ngm (-n or --topn)

Version 0.1

Initial release