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rna-seq-pop-paired-end

Implement rna-seq-pop results book #43

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Implement rna-seq-pop results book

Implement rna-seq-pop results book #43

Workflow file for this run

.github/workflows/github-action-rna-seq-pop-paired-end.yml at d945e19
name: rna-seq-pop-paired-end
on: pull_request
jobs:
run-workflow:
runs-on: ubuntu-latest
steps:
- name: Set up python3
uses: actions/setup-python@v2
with:
python-version: '3.9' # Version range or exact version of a Python version to use, using SemVer's version range syntax
- name: Checkout repository
uses: actions/checkout@v2
with:
submodules: recursive
- name: cp pfam/go files
run: cp resources/Anogam_long.pep_eggnog_diamond.emapper.annotations.tsv.gz resources/Anogam_long.pep_Pfamscan.seqs.gz .test/resources
- name: cp results book yamls
run: cp docs/rna-seq-pop-results/_toc.yml docs/rna-seq-pop-results/_config.yml .test/docs/rna-seq-pop-results
- name: Test workflow paired-end
uses: snakemake/[email protected]
with:
directory: '.test'
snakefile: 'workflow/Snakefile'
args: '--cores 4 --use-conda --configfile .test/config/config_paired_end.yaml --conda-cleanup-pkgs cache'