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python toolbox to analyse physiological signals : respiration and ECG

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samuelgarcia/physio

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physio

Simple python toolbox to analyse physio signals (Respiration, ECG, and RSA)

Please jump to documentation now https://physio.readthedocs.io

Manuscript

This work has been published at eNeuro : https://www.eneuro.org/content/10/10/ENEURO.0197-23.2023

Features

  • respiration cycle detection
  • respiration cycle features (amplitude, duration, volumes ...)
  • simple preprocess on signal : filter using scipy and smoothing
  • ecg peak detection
  • ecg/hrv metrics (time domain and freq domain)
  • rsa : new approach to get cycle-per-cycle metrics
  • cyclic deformation machinery : a simple strecher of any signal to cycle template
  • simple reader of micromed and brainvision using neo
  • "automagic" parameters for differents species

## Installation from PyPi

pip install physio

## Installation from source

git clone https://github.com/samuelgarcia/physio.git
cd physio
pip install -e .

Update:

cd physio
git pull origin main

Authors

Samuel Garcia with the help of Valentin Ghibaudo and Jules Granget

This toolbox is used in the CMO team from the CRNL.