Upgrade to samtools 1.19.1 for interop testing. (#1706)

* Upgrade to samtools 1.19.1 for interop testing.
samtools · Mar 5, 2024 · 222d10b · 222d10b
1 parent b16416c
commit 222d10b
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diff --git a/scripts/install-samtools.sh b/scripts/install-samtools.sh
@@ -1,5 +1,5 @@
 #!/bin/sh
 set -ex
-wget https://github.com/samtools/samtools/releases/download/1.14/samtools-1.14.tar.bz2
-tar -xjvf samtools-1.14.tar.bz2
-cd samtools-1.14 && ./configure --prefix=/usr && make && sudo make install
+wget https://github.com/samtools/samtools/releases/download/1.19.1/samtools-1.19.1.tar.bz2
+tar -xjvf samtools-1.19.1.tar.bz2
+cd samtools-1.19.1 && ./configure --prefix=/usr && make && sudo make install
diff --git a/src/test/java/htsjdk/utils/SamtoolsTestUtils.java b/src/test/java/htsjdk/utils/SamtoolsTestUtils.java
@@ -13,7 +13,7 @@
  */
 public class SamtoolsTestUtils {
     private static final String SAMTOOLS_BINARY_ENV_VARIABLE = "HTSJDK_SAMTOOLS_BIN";
-    public final static String expectedSamtoolsVersion = "1.14";
+    public final static String expectedSamtoolsVersion = "1.19.1";
 
     /**
      * @return true if samtools is available, otherwise false