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Mapper-related distmap arguments should be conditional #83

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magicDGS opened this issue Feb 27, 2018 · 0 comments
Open
2 tasks

Mapper-related distmap arguments should be conditional #83

magicDGS opened this issue Feb 27, 2018 · 0 comments

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@magicDGS
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There are two mapper-related distmap arguments that should be conditional on the mapper used (error if provided without the mapper, and required/optional depending on the argument):

  • --gsnap-output-split - I know very little about this
  • bwa-sampe-args - should be used for bwa-aln, and it might be required to be sure that it is doing what the user expects
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