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32 Open 19 Closed
32 Open 19 Closed
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Issues list

bwa mapper-args
#131 opened Nov 15, 2018 by robmaz
requirement of File::Which module
#130 opened Nov 14, 2018 by robmaz
print help message instead of errors when called without args enhancement
#129 opened Oct 2, 2018 by robmaz
add a --interleave-input option enhancement ReadTools
#128 opened Oct 2, 2018 by robmaz
2
Uninitialized values in GenomeIndex.pm bug
#127 opened Oct 2, 2018 by robmaz
1
Is index created twice? bug
#126 opened Oct 2, 2018 by robmaz
Should this repo live in the vetmeduni organization?
#125 opened Aug 23, 2018 by magicDGS
@robmaz
Should this repo live in the vetmeduni organization?
#124 opened Aug 23, 2018 by magicDGS
Cleanup bin folder cleanup developer enhancement
#100 opened Jul 18, 2018 by magicDGS
1 of 6 tasks
Linux/MacOS unified version
Add version to genome archive enhancement idea
#89 opened Jun 6, 2018 by magicDGS
Project: beta release developer
#84 opened Feb 27, 2018 by magicDGS
Mapper-related distmap arguments should be conditional documentation enhancement
#83 opened Feb 27, 2018 by magicDGS
2 tasks
Long term changes
Job priority cannot be set (--job-priority does not exists) documentation enhancement Hadoop question user
#82 opened Feb 27, 2018 by magicDGS
Expose bin/distmap hardcoded number_of_processors? documentation enhancement Hadoop question user
#81 opened Feb 27, 2018 by magicDGS Long term changes
1
Remove picard requirement cleanup enhancement ReadTools
#78 opened Feb 27, 2018 by magicDGS
5 of 8 tasks
Long term changes
3
Perl syntax check fails for almost every file in the bin package bug
#72 opened Feb 26, 2018 by magicDGS
Perl syntax check fails for almost every file in the lib package bug
#71 opened Feb 26, 2018 by magicDGS
bin/distmap script should be just a command line parser cleanup developer documentation enhancement
#66 opened Feb 23, 2018 by magicDGS
4 tasks
Long term changes
Use properly pod2usage to print help cleanup documentation enhancement idea
#65 opened Feb 23, 2018 by magicDGS
1 of 5 tasks
Long term changes
1
Add a dry-run option developer enhancement idea
#58 opened Feb 21, 2018 by magicDGS Long term changes
@robmaz
2
hdfs: use 4mc instead of bzip2/gzip developer enhancement Hadoop ReadTools
#52 opened Feb 15, 2018 by robmaz Long term changes
3
New idea: using docker containers for mappers Hadoop idea
#50 opened Jan 25, 2018 by magicDGS Long term changes
3
support BAM input enhancement ReadTools
#49 opened Jan 18, 2018 by robmaz Long term changes
2
Use python for mapper scripts cleanup developer enhancement idea question
#43 opened Dec 4, 2017 by magicDGS Long term changes
Alternative for trimming in the cluster developer enhancement ReadTools
#33 opened Dec 1, 2017 by magicDGS
3 of 4 tasks
Long term changes
5
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