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Perl syntax check fails for almost every file in the lib package #71

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magicDGS opened this issue Feb 26, 2018 · 0 comments
Open

Perl syntax check fails for almost every file in the lib package #71

magicDGS opened this issue Feb 26, 2018 · 0 comments
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@magicDGS
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magicDGS commented Feb 26, 2018 •
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Running perl -c in each of the lib packages, only ReadToolsUtils and Utility passes the checks:

  • DataCleanup.pm
Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /Users/daniel/workspaces/distmap_robmaz/lib/perl5/site_perl/../lib/perl5/site_perl /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at lib/perl5/site_perl/DataCleanup.pm line 7.
BEGIN failed--compilation aborted at lib/perl5/site_perl/DataCleanup.pm line 7.
  • DataDownload.pm
Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /Users/daniel/workspaces/distmap_robmaz/lib/perl5/site_perl/../lib/perl5/site_perl /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at lib/perl5/site_perl/DataDownload.pm line 7.
BEGIN failed--compilation aborted at lib/perl5/site_perl/DataDownload.pm line 7.
  • DataDownloadAndMerge.pm
Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /Users/daniel/workspaces/distmap_robmaz/lib/perl5/site_perl/../lib/perl5/site_perl /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at lib/perl5/site_perl/DataDownloadAndMerge.pm line 8.
BEGIN failed--compilation aborted at lib/perl5/site_perl/DataDownloadAndMerge.pm line 8.
  • DataMerge.pm
Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /Users/daniel/workspaces/distmap_robmaz/lib/perl5/site_perl/../lib/perl5/site_perl /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at lib/perl5/site_perl/DataMerge.pm line 7.
BEGIN failed--compilation aborted at lib/perl5/site_perl/DataMerge.pm line 7.
  • DataProcess.pm
Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /Users/daniel/workspaces/distmap_robmaz/lib/perl5/site_perl/../lib/perl5/site_perl /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at lib/perl5/site_perl/DataProcess.pm line 14.
BEGIN failed--compilation aborted at lib/perl5/site_perl/DataProcess.pm line 14.
  • DataUpload.pm
Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /Users/daniel/workspaces/distmap_robmaz/lib/perl5/site_perl/../lib/perl5/site_perl /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at lib/perl5/site_perl/DataUpload.pm line 7.
BEGIN failed--compilation aborted at lib/perl5/site_perl/DataUpload.pm line 7.
  • DownloadTrimmedRead.pm
Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /Users/daniel/workspaces/distmap_robmaz/lib/perl5/site_perl/../lib/perl5/site_perl /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at lib/perl5/site_perl/DownloadTrimmedRead.pm line 12.
BEGIN failed--compilation aborted at lib/perl5/site_perl/DownloadTrimmedRead.pm line 12.
  • GenomeIndex.pm
Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /Users/daniel/workspaces/distmap_robmaz/lib/perl5/site_perl/../lib/perl5/site_perl /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at lib/perl5/site_perl/GenomeIndex.pm line 11.
BEGIN failed--compilation aborted at lib/perl5/site_perl/GenomeIndex.pm line 11.
  • HadoopMapping.pm
Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /Users/daniel/workspaces/distmap_robmaz/lib/perl5/site_perl/../lib/perl5/site_perl /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at lib/perl5/site_perl/HadoopMapping.pm line 10.
BEGIN failed--compilation aborted at lib/perl5/site_perl/HadoopMapping.pm line 10.
  • HadoopTrimming.pm
Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /Users/daniel/workspaces/distmap_robmaz/lib/perl5/site_perl/../lib/perl5/site_perl /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at lib/perl5/site_perl/HadoopTrimming.pm line 10.
BEGIN failed--compilation aborted at lib/perl5/site_perl/HadoopTrimming.pm line 10.
  • ReadToolsUtils.pm
lib/perl5/site_perl/ReadToolsUtils.pm syntax OK
  • TrimDataMerge.pm
Can't locate Utility.pm in @INC (you may need to install the Utility module) (@INC contains: /Users/daniel/workspaces/distmap_robmaz/lib/perl5/site_perl/../lib/perl5/site_perl /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/site_perl/5.26.1 /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1/darwin-thread-multi-2level /usr/local/Cellar/perl/5.26.1/lib/perl5/5.26.1 /usr/local/lib/perl5/site_perl/5.26.1/darwin-thread-multi-2level /usr/local/lib/perl5/site_perl/5.26.1) at lib/perl5/site_perl/TrimDataMerge.pm line 7.
BEGIN failed--compilation aborted at lib/perl5/site_perl/TrimDataMerge.pm line 7.
  • Utility.pm
lib/perl5/site_perl/Utility.pm syntax OK
@magicDGS magicDGS added the bug label Feb 26, 2018
@magicDGS magicDGS changed the title Perl syntax check fails for almost every file in the package Perl syntax check fails for almost every file in the lib package Feb 26, 2018
@magicDGS magicDGS mentioned this issue Feb 26, 2018
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@magicDGS magicDGS added this to the Linux/MacOS unified version milestone Feb 27, 2018
@magicDGS magicDGS removed this from the Linux/MacOS unified version milestone Feb 27, 2018
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