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add a --interleave-input option #128

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robmaz opened this issue Oct 2, 2018 · 2 comments
Open

add a --interleave-input option #128

robmaz opened this issue Oct 2, 2018 · 2 comments
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enhancement ReadTools

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@robmaz
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robmaz commented Oct 2, 2018

This is necessary to process interleaved fastq input and bam input. Will be another way to start pe processing.
@magicDGS
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Note: I would recommend to add a method to obtain the command line for the input (ReadTools upload command) in ReadToolsUtils. If any change happens in future versions of ReadTools, it will be much better for me to look into that class to support later versions (e.g., v2, which is under design).

@magicDGS
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Related to #49 too

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@magicDGS @robmaz