v0.9.2

What's Changed

• chore: Update CITATION.cff by @rhysnewell in #197
• Fix checkm2 env by @AroneyS in #212
• Update annotation.smkwith new GTDB DB URL by @JamesRH in #207

New Contributors

• @JamesRH made their first contribution in #207

Full Changelog: v0.9.1...v0.9.2

v0.9.1

What's Changed

• fix: batch submission now does not require user to write to script first by @rhysnewell in #199
• fix: batch checks read type correctly by @rhysnewell in #202
• convert rule spades_assembly to a python script by @YibiChen in #201
• fix tmpdir being set from base command by @AroneyS in #200

New Contributors

• @YibiChen made their first contribution in #201

Full Changelog: v0.9.0...v0.9.1

v0.9.0

What's Changed

• megahit: Specify -m in bytes. by @wwood in #176
• cff-update: Update to v0.8.3. by @wwood in #175
• singlem: Update to 0.16.0. by @wwood in #177
• Add SingleM metapackage downloading by @AroneyS in #173
• threading issues and rosella version by @rhysnewell in #179
• das_tool: Use script not shell. by @wwood in #187
• Loosen same-group permissions for folders and logs by @AroneyS in #189
• Doco updates by @wwood in #184
• Adding binning-only flag, simplify recipes by @rhysnewell in #192

Full Changelog: v0.8.3...v0.9.0

v0.8.3

What's Changed

• v0.8.2 by @rhysnewell in #160
• attempt to fix #166 by interleaving reads correctly by @rhysnewell in #167
• Singlem update by @wwood in #156
• Set pplacer threads by @AroneyS in #171
• citations: Improve them. by @wwood in #162
• Update rosella to v0.5.0 by @rhysnewell in #168

Full Changelog: v0.8.2...v0.8.3

v0.8.2

What's Changed

• Fix arg parsing issue by @rhysnewell in #144
• Update resources by @AroneyS in #153
• Fix short read coassemble qc by @AroneyS in #155
• Add fastp and update docs by @rhysnewell in #154
• singlem: Restrict to 0.13.2. Fixes #157. by @wwood in #159

Full Changelog: v0.8.1...v0.8.2

v0.8.1

What's Changed

• bump to v0.8.0 by @rhysnewell in #141

Full Changelog: v0.8.0...v0.8.1

v0.8.0

What's Changed

• update deploy docs by @rhysnewell in #116
• v0.7.1 by @rhysnewell in #119
• bump version by @rhysnewell in #125
• v0.7.2 by @rhysnewell in #126
• fix empty bin_info.tsv with --skip-abundances by @AroneyS in #127
• Catchup dev to main by @AroneyS in #128
• Better snakemake cluster submission support by @AroneyS in #129
• Remove upper snakemake bound by @AroneyS in #131
• Make long read qc temp by @rhysnewell in #132
• fix: link reads was not properly account for coassemble flag by @rhysnewell in #139

Full Changelog: v0.7.2...v0.8.0

v0.7.2

What's Changed

• refinery: only copy actual bins by @AroneyS in #121
• Implement skip abundances arg by @AroneyS in #123

Full Changelog: v0.7.1...v0.7.2

v0.7.1

What's Changed

• Citations update by @wwood in #109
• update: v0.7.0 by @rhysnewell in #110
• Merge v0.7.0 to main by @rhysnewell in #111
• update: documentation branch from master to main by @rhysnewell in #112
• update: docs workflow by @rhysnewell in #113
• Update docs changes so they also occur on dev branch by @rhysnewell in #114
• add: homebrew setup in actions by @rhysnewell in #115
• fixed combine assembly script, fixes #117 by @rhysnewell in #118

Full Changelog: v0.7.0...v0.7.1

v0.7.0

What's Changed

• Merge Dev into Main by @rhysnewell in #96
• update version to v0.6.0 on main by @rhysnewell in #98
• Rework skip-binners by @AroneyS in #101
• Catch dev up to main by @rhysnewell in #102
• Add refinery max iterations arg by @AroneyS in #103
• Update to semibin2 by @AroneyS in #104
• Fix checkm subprocess by @AroneyS in #105
• fix: removal of instances of shell=True by @rhysnewell in #107

Full Changelog: v0.6.0...v0.7.0