Initialize repo

realHenningLorenzen · Jan 22, 2024 · a8b0af3 · a8b0af3
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diff --git a/.github/CONTRIBUTING.md b/.github/CONTRIBUTING.md
@@ -130,7 +130,7 @@ The package maintainer also reserves the right to adjust the criteria to recogni
 If you have further questions regarding the contribution guidelines, please contact the package/repository maintainer.
 
 <!-- urls -->
-[docs]: https://insightsengineering.github.io/r.pkg.template/index.html
-[articles]: https://insightsengineering.github.io/r.pkg.template/main/articles/index.html
-[license]: https://insightsengineering.github.io/r.pkg.template/main/LICENSE-text.html
-[insights]: https://github.com/insightsengineering/r.pkg.template/pulse
+[docs]: https://insightsengineering.github.io/coursera.cicd.lab/index.html
+[articles]: https://insightsengineering.github.io/coursera.cicd.lab/main/articles/index.html
+[license]: https://insightsengineering.github.io/coursera.cicd.lab/main/LICENSE-text.html
+[insights]: https://github.com/insightsengineering/coursera.cicd.lab/pulse
diff --git a/.github/ISSUE_TEMPLATE/bug.yml b/.github/ISSUE_TEMPLATE/bug.yml
@@ -37,15 +37,15 @@ body:
     id: code-of-conduct
     attributes:
       label: Code of Conduct
-      description: By submitting this issue, you agree to follow our [Code of Conduct](https://insightsengineering.github.io/r.pkg.template/CODE_OF_CONDUCT.html)
+      description: By submitting this issue, you agree to follow our [Code of Conduct](https://realHenningLorenzen.github.io/coursera.cicd.lab/CODE_OF_CONDUCT.html)
       options:
         - label: I agree to follow this project's Code of Conduct.
           required: true
   - type: checkboxes
     id: contributor-guidelines
     attributes:
       label: Contribution Guidelines
-      description: By submitting this issue, you agree to follow our [Contribution Guidelines](https://insightsengineering.github.io/r.pkg.template/CONTRIBUTING.html)
+      description: By submitting this issue, you agree to follow our [Contribution Guidelines](https://realHenningLorenzen.github.io/coursera.cicd.lab/CONTRIBUTING.html)
       options:
         - label: I agree to follow this project's Contribution Guidelines.
           required: true
diff --git a/.github/ISSUE_TEMPLATE/feature.yml b/.github/ISSUE_TEMPLATE/feature.yml
@@ -13,15 +13,15 @@ body:
     id: code-of-conduct
     attributes:
       label: Code of Conduct
-      description: By submitting this issue, you agree to follow our [Code of Conduct](https://insightsengineering.github.io/r.pkg.template/CODE_OF_CONDUCT.html)
+      description: By submitting this issue, you agree to follow our [Code of Conduct](https://realHenningLorenzen.github.io/coursera.cicd.lab/CODE_OF_CONDUCT.html)
       options:
         - label: I agree to follow this project's Code of Conduct.
           required: true
   - type: checkboxes
     id: contributor-guidelines
     attributes:
       label: Contribution Guidelines
-      description: By submitting this issue, you agree to follow our [Contribution Guidelines](https://insightsengineering.github.io/r.pkg.template/CONTRIBUTING.html)
+      description: By submitting this issue, you agree to follow our [Contribution Guidelines](https://realHenningLorenzen.github.io/coursera.cicd.lab/CONTRIBUTING.html)
       options:
         - label: I agree to follow this project's Contribution Guidelines.
           required: true
diff --git a/.github/ISSUE_TEMPLATE/question.yml b/.github/ISSUE_TEMPLATE/question.yml
@@ -13,15 +13,15 @@ body:
     id: code-of-conduct
     attributes:
       label: Code of Conduct
-      description: By submitting this issue, you agree to follow our [Code of Conduct](https://insightsengineering.github.io/r.pkg.template/CODE_OF_CONDUCT.html)
+      description: By submitting this issue, you agree to follow our [Code of Conduct](https://realHenningLorenzen.github.io/coursera.cicd.lab/CODE_OF_CONDUCT.html)
       options:
         - label: I agree to follow this project's Code of Conduct.
           required: true
   - type: checkboxes
     id: contributor-guidelines
     attributes:
       label: Contribution Guidelines
-      description: By submitting this issue, you agree to follow our [Contribution Guidelines](https://insightsengineering.github.io/r.pkg.template/CONTRIBUTING.html)
+      description: By submitting this issue, you agree to follow our [Contribution Guidelines](https://realHenningLorenzen.github.io/coursera.cicd.lab/CONTRIBUTING.html)
       options:
         - label: I agree to follow this project's Contribution Guidelines.
           required: true
diff --git a/.github/workflows/bioccheck.yaml b/.github/workflows/bioccheck.yaml
@@ -18,7 +18,7 @@ on:
   workflow_dispatch:
   workflow_call:
     secrets:
-      REPO_GITHUB_TOKEN:
+      GITHUB_TOKEN:
         description: |
           Github token with read access to repositories, required for staged.dependencies installation
         required: false
@@ -79,12 +79,12 @@ jobs:
       - name: Setup token 🔑
         id: github-token
         run: |
-          if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then
-            echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
+          if [ "${{ secrets.GITHUB_TOKEN }}" == "" ]; then
+            echo "GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
             echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           else
-            echo "Using REPO_GITHUB_TOKEN."
-            echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
+            echo "Using GITHUB_TOKEN."
+            echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           fi
         shell: bash
 

diff --git a/.github/workflows/branch-cleanup.yaml b/.github/workflows/branch-cleanup.yaml
@@ -4,7 +4,7 @@ name: Branch Cleanup 🍃
 on:
   workflow_call:
     secrets:
-      REPO_GITHUB_TOKEN:
+      GITHUB_TOKEN:
         description: |
           Github token with write access to repository
         required: false
@@ -27,12 +27,12 @@ jobs:
       - name: Setup token 🔑
         id: github-token
         run: |
-          if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then
-            echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
+          if [ "${{ secrets.GITHUB_TOKEN }}" == "" ]; then
+            echo "GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
             echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           else
-            echo "Using REPO_GITHUB_TOKEN."
-            echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
+            echo "Using GITHUB_TOKEN."
+            echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           fi
         shell: bash
 

diff --git a/.github/workflows/build-check-install.yaml b/.github/workflows/build-check-install.yaml
@@ -18,7 +18,7 @@ on:
   workflow_dispatch:
   workflow_call:
     secrets:
-      REPO_GITHUB_TOKEN:
+      GITHUB_TOKEN:
         description: |
           Github token with read access to repositories, required for staged.dependencies installation
         required: false
@@ -199,12 +199,12 @@ jobs:
       - name: Setup token 🔑
         id: github-token
         run: |
-          if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then
-            echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
+          if [ "${{ secrets.GITHUB_TOKEN }}" == "" ]; then
+            echo "GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
             echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           else
-            echo "Using REPO_GITHUB_TOKEN."
-            echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
+            echo "Using GITHUB_TOKEN."
+            echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           fi
         shell: bash
 
@@ -773,12 +773,12 @@ jobs:
       - name: Setup token 🔑
         id: github-token
         run: |
-          if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then
-            echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
+          if [ "${{ secrets.GITHUB_TOKEN }}" == "" ]; then
+            echo "GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
             echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           else
-            echo "Using REPO_GITHUB_TOKEN."
-            echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
+            echo "Using GITHUB_TOKEN."
+            echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           fi
         shell: bash
 

diff --git a/.github/workflows/check.yaml.shared b/.github/workflows/check.yaml.shared
@@ -23,7 +23,7 @@ jobs:
     name: R CMD Check 🧬
     uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
     with:
       additional-env-vars: |
         _R_CHECK_CRAN_INCOMING_REMOTE_=false
@@ -32,7 +32,7 @@ jobs:
     name: Coverage 📔
     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   linter:
     if: github.event_name == 'pull_request'
     name: SuperLinter 🦸‍♀️
@@ -41,7 +41,7 @@ jobs:
     name: Roxygen 🅾
     uses: insightsengineering/r.pkg.template/.github/workflows/roxygen.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
     with:
       auto-update: true
   gitleaks:
@@ -60,7 +60,7 @@ jobs:
     if: github.event_name == 'push'
     uses: insightsengineering/r.pkg.template/.github/workflows/version-bump.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   version:
     name: Version Check 🏁
     uses: insightsengineering/r.pkg.template/.github/workflows/version.yaml@main

diff --git a/.github/workflows/docs.yaml.shared b/.github/workflows/docs.yaml.shared
@@ -38,4 +38,4 @@ jobs:
     name: Pkgdown Docs 📚
     uses: insightsengineering/r.pkg.template/.github/workflows/pkgdown.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -27,7 +27,7 @@ on:
   workflow_dispatch:
   workflow_call:
     secrets:
-      REPO_GITHUB_TOKEN:
+      GITHUB_TOKEN:
         description: |
           Github token with read access to repositories, required for staged.dependencies installation
         required: false
@@ -132,12 +132,12 @@ jobs:
       - name: Setup token 🔑
         id: github-token
         run: |
-          if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then
-            echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
+          if [ "${{ secrets.GITHUB_TOKEN }}" == "" ]; then
+            echo "GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
             echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           else
-            echo "Using REPO_GITHUB_TOKEN."
-            echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
+            echo "Using GITHUB_TOKEN."
+            echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           fi
         shell: bash
 

diff --git a/.github/workflows/post-release.yaml.shared b/.github/workflows/post-release.yaml.shared
@@ -10,6 +10,6 @@ jobs:
     name: Version Bump 🤜🤛
     uses: insightsengineering/r.pkg.template/.github/workflows/version-bump.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
     with:
       vbump-after-release: true
diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml
@@ -7,7 +7,7 @@ on:
       - "v*"
   workflow_call:
     secrets:
-      REPO_GITHUB_TOKEN:
+      GITHUB_TOKEN:
         description: |
           Github token with write access to the repository
         required: false
@@ -39,12 +39,12 @@ jobs:
       - name: Setup token 🔑
         id: github-token
         run: |
-          if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then
-            echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
+          if [ "${{ secrets.GITHUB_TOKEN }}" == "" ]; then
+            echo "GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
             echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           else
-            echo "Using REPO_GITHUB_TOKEN."
-            echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
+            echo "Using GITHUB_TOKEN."
+            echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           fi
         shell: bash
 

diff --git a/.github/workflows/release.yaml.shared b/.github/workflows/release.yaml.shared
@@ -13,7 +13,7 @@ jobs:
     needs: release
     uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
     with:
       skip-r-cmd-check: true
       skip-r-cmd-install: true
@@ -22,26 +22,26 @@ jobs:
     needs: release
     uses: insightsengineering/r.pkg.template/.github/workflows/pkgdown.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
     with:
       default-landing-page: latest-tag
   validation:
     name: R Package Validation report 📃
     needs: release
     uses: insightsengineering/r.pkg.template/.github/workflows/validation.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   release:
     name: Create release 🎉
     uses: insightsengineering/r.pkg.template/.github/workflows/release.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
   r-cmd:
     name: R CMD Check 🧬
     needs: [release, docs]
     uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
     with:
       additional-env-vars: |
         _R_CHECK_CRAN_INCOMING_REMOTE_=false
@@ -51,4 +51,4 @@ jobs:
     needs: [release, docs]
     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
diff --git a/.github/workflows/roxygen.yaml b/.github/workflows/roxygen.yaml
@@ -42,7 +42,7 @@ on:
         type: string
         default: "."
     secrets:
-      REPO_GITHUB_TOKEN:
+      GITHUB_TOKEN:
         description: |
           Github token with read access to repositories, required for staged.dependencies installation
         required: false
@@ -65,12 +65,12 @@ jobs:
       - name: Setup token 🔑
         id: github-token
         run: |
-          if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then
-            echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
+          if [ "${{ secrets.GITHUB_TOKEN }}" == "" ]; then
+            echo "GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
             echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           else
-            echo "Using REPO_GITHUB_TOKEN."
-            echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
+            echo "Using GITHUB_TOKEN."
+            echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           fi
         shell: bash
 

diff --git a/.github/workflows/scheduled.yaml.shared b/.github/workflows/scheduled.yaml.shared
@@ -15,7 +15,7 @@ jobs:
     uses: insightsengineering/r.pkg.template/.github/workflows/verdepcheck.yaml@main
     name: Dependency Test - ${{ matrix.test-strategy }} 🔢
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       GCHAT_WEBHOOK: ${{ secrets.GCHAT_WEBHOOK }}
     with:
       strategy: ${{ matrix.test-strategy }}
@@ -25,4 +25,4 @@ jobs:
     name: Branch Cleanup 🧹
     uses: insightsengineering/r.pkg.template/.github/workflows/branch-cleanup.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
diff --git a/.github/workflows/spelling.yaml b/.github/workflows/spelling.yaml
@@ -16,7 +16,7 @@ on:
   workflow_dispatch:
   workflow_call:
     secrets:
-      REPO_GITHUB_TOKEN:
+      GITHUB_TOKEN:
         description: Github token with write access to the repo
         required: false
     inputs:
@@ -49,12 +49,12 @@ jobs:
       - name: Setup token 🔑
         id: github-token
         run: |
-          if [ "${{ secrets.REPO_GITHUB_TOKEN }}" == "" ]; then
-            echo "REPO_GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
+          if [ "${{ secrets.GITHUB_TOKEN }}" == "" ]; then
+            echo "GITHUB_TOKEN is empty. Substituting it with GITHUB_TOKEN."
             echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           else
-            echo "Using REPO_GITHUB_TOKEN."
-            echo "token=${{ secrets.REPO_GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
+            echo "Using GITHUB_TOKEN."
+            echo "token=${{ secrets.GITHUB_TOKEN }}" >> $GITHUB_OUTPUT
           fi
         shell: bash