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    8 repositories

    • mbin

      Public
      mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
      Python
      •
      Other
      •3•25•7•4•Updated Dec 26, 2022Dec 26, 2022

    • nanodisco

      Public
      nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
      R
      •
      Other
      •7•67•32•0•Updated May 20, 2022May 20, 2022

    • 6mASCOPE

      Public
      Python
      •
      Other
      •0•8•0•0•Updated Feb 3, 2022Feb 3, 2022

    • MeMoRe

      Public
      Tool for validation of methylation motifs detected with SMRT sequencing
      R
      •0•3•0•0•Updated Jul 9, 2021Jul 9, 2021

    • BEAST

      Public
      Bacterial Epigenomics Analysis SuiTe
      rna-seqmethylationepigeneticshgtbacteriadifferential-expressionunix-shellrecombinationtfbs-discoverysmrt
      R
      •2•9•0•0•Updated May 4, 2020May 4, 2020

    • SMRTER

      Public
      Single Molecule Real Time sequencing Epigenetic Refinement
      R
      •2•6•3•0•Updated Jan 29, 2019Jan 29, 2019

    • SMALR

      Public
      SMALR: a framework for single-molecule level interrogation of the methylation status of SMRT reads.
      Python
      •
      Other
      •6•8•7•0•Updated Apr 12, 2018Apr 12, 2018

    • MatrixEpistasis

      Public
      Ultrafast exhaustive epistasis scan for quantitative traits with covariate adjustment
      R
      •4•5•2•0•Updated Mar 5, 2018Mar 5, 2018