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    81 repositories

    • dds_web

      Public
      A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).
      pythonflask
      Python
      •
      Other
      •8•8•0•3•Updated Oct 15, 2024Oct 15, 2024

    • precision-medicine-portal-frontend

      Public
      React project for the frontend of the Precision Medicine Portal by DC Data Science Node
      TypeScript
      •
      MIT License
      •0•1•0•0•Updated Oct 15, 2024Oct 15, 2024

    • serve

      Public
      SciLifeLab Serve is a platform offering machine learning model serving, data science app hosting (Shiny, Gradio, Streamlit, Dash, etc.), and other tools to life science researchers affiliated with a Swedish research institute.
      JavaScript
      •
      Apache License 2.0
      •0•3•0•3•Updated Oct 14, 2024Oct 14, 2024

    • genome-portal

      Public
      Genome browser portal for organisms assembled in Sweden
      HTML
      •
      MIT License
      •0•0•0•3•Updated Oct 14, 2024Oct 14, 2024

    • serve-charts

      Public
      SciLifeLab Serve charts repository
      Smarty
      •
      Other
      •0•1•0•2•Updated Oct 14, 2024Oct 14, 2024

    • pathogens-portal

      Public
      Swedish pathogens portal
      bootstrapmarkdownhugocovid-19
      HTML
      •
      MIT License
      •27•12•0•0•Updated Oct 11, 2024Oct 11, 2024

    • dds_cli

      Public
      The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.
      clickpythoncommand-line
      Python
      •
      MIT License
      •12•9•2•1•Updated Oct 11, 2024Oct 11, 2024

    • serve-load-testing

      Public
      Load testing for SciLifeLab Serve using the Python Locust library.
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Oct 11, 2024Oct 11, 2024

    • Publications

      Public
      A web-based publications reference database system.
      Python
      •
      MIT License
      •3•10•9•8•Updated Oct 10, 2024Oct 10, 2024

    • dc-dynamic

      Public
      Python
      •1•2•0•0•Updated Oct 4, 2024Oct 4, 2024

    • pathogens-portal-scripts

      Public
      This repository holds the scripts produced for the Swedish Pathogens Portal
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 4, 2024Oct 4, 2024

    • pathogens-portal-visualisations

      Public
      This repository holds the visualisations produced for the Swedish Pathogens Portal
      Python
      •
      MIT License
      •0•4•0•0•Updated Oct 4, 2024Oct 4, 2024

    • serve-images

      Public
      All files related to images used in Serve
      Python
      •1•1•2•0•Updated Oct 4, 2024Oct 4, 2024

    • data.scilifelab.se

      Public
      SciLifeLab Data Platform
      HTML
      •
      MIT License
      •4•2•0•0•Updated Oct 4, 2024Oct 4, 2024

    • RDM-guidelines

      Public
      This is the repository for SciLifelab Research Data Management (RDM) guidelines, a central resource to provide information about data management.
      HTML
      •
      Other
      •3•5•18•2•Updated Oct 2, 2024Oct 2, 2024

    • data-platform-scripts

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • dsw-appendix

      Public
      More information for DSW KM topics
      CSS
      •
      Other
      •1•1•0•3•Updated Sep 27, 2024Sep 27, 2024

    • scilifelabdatacentre.github.io

      Public
      GH Pages for a workshop organized by DC
      JavaScript
      •0•1•0•0•Updated Sep 18, 2024Sep 18, 2024

    • serve-event-listener

      Public
      This repository contains the code for the serve event listener functionality
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 11, 2024Sep 11, 2024

    • dds_workshop

      Public
      Documentation for the DDS Workshop (Autumn 2024)
      MIT License
      •0•3•0•0•Updated Aug 29, 2024Aug 29, 2024

    • DIGIfor1Health_web

      Public
      Liquid
      •
      MIT License
      •0•0•4•0•Updated Aug 14, 2024Aug 14, 2024

    • sodar-docker-compose

      Public
      Setup SODAR using Docker Compose
      Shell
      •
      MIT License
      •3•0•0•0•Updated Aug 8, 2024Aug 8, 2024

    • pyjb

      Public
      Jupyter widgets for the JBrowse2 genome browser
      JavaScript
      •0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • Anubis

      Public
      Proposal submission and review handling system.
      Python
      •
      MIT License
      •2•2•4•9•Updated Jul 11, 2024Jul 11, 2024

    • DbShare

      Public
      Web service to share and query tabular data sets stored in SQLite3 databases.
      Python
      •
      MIT License
      •0•3•6•7•Updated Jul 9, 2024Jul 9, 2024

    • DataGraphics

      Public
      Post datasets and graphics on the web using Vega-Lite graphics.
      Python
      •
      MIT License
      •0•2•11•9•Updated Jul 9, 2024Jul 9, 2024

    • blobserver

      Public
      Simple web app to server blobs (files containing any data) publicly. A file can be uploaded or updated by an authorized account, either via the web interface or via a script.
      Python
      •
      MIT License
      •0•2•2•7•Updated Jul 9, 2024Jul 9, 2024

    • OrderPortal

      Public
      A portal for orders (requests, project applications, etc) to a facility from its users.
      Python
      •
      MIT License
      •12•6•6•6•Updated Jul 6, 2024Jul 6, 2024

    • seek

      Public template
      For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
      Ruby
      •
      BSD 3-Clause "New" or "Revised" License
      •52•0•0•0•Updated Jul 3, 2024Jul 3, 2024

    • maintenance-page

      Public
      Simple maintenance page running nginx in a Docker container
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Jun 1, 2024Jun 1, 2024