This repository holds the scripts produced for the Swedish Pathogens Portal that are not directly associated with visualisations or the underlying code used to generate the Portal itself. Those scripts can instead be found in our visualisations repository and our main web repository.
This folder contains all of the scripts and associated files used to update the available data table on the Portal. Instructions on the use of the scripts and files, as well as how they could potentially be changed to be used for other purposes.
This folder contains all of the scripts used to update the covid publications database. Instructions on the use of the scripts can be found in the directory.
This folder contains all of the scripts used to update EBI index JSON file. This will be run as a dialy cronjob in dc-dynamic. The index file is parsed by EBI (on regular basis) and the info about dataset/dashboards are put up in the main EU pathogens portal.