The Blue Brain Project

All

295 repositories

core-web-app
Public
Open Brain Platform
neuroscience simulation-neuroscience
TypeScript
•
Apache License 2.0
•0•3•0•0•Updated Nov 1, 2024Nov 1, 2024
bbp-atlas-pipeline
Public
Set of processing modules that generate annotation volumes, brain region hierarchies, direction vectors, orientations and placement hints, cell density volumes for several cell types, CellComposition of the brain regions.
database atlas
Jupyter Notebook
•
Apache License 2.0
•0•1•0•1•Updated Nov 1, 2024Nov 1, 2024
neuroagent
Public
LLM agent made to communicate with different neuroscience related tools
Python
•
Apache License 2.0
•0•7•0•3•Updated Nov 1, 2024Nov 1, 2024
Brayns
Public
Visualizer for large-scale and interactive ray-tracing of neurons
visualization python interactive websockets neuroscience json-rpc neurons raytracing volume-rendering pathtracing
C++
•
GNU Lesser General Public License v3.0
•46•291•1•0•Updated Nov 1, 2024Nov 1, 2024
BluePyEModel
Public
Blue Brain Python Electrical Modeling Pipeline
python workflow build simulation neuroscience modelling parameter analyse neuron optimisation
Python
•
Other
•5•6•0•1•Updated Nov 1, 2024Nov 1, 2024
blueconfigs
Public
Shell
•
Apache License 2.0
•0•0•0•0•Updated Nov 1, 2024Nov 1, 2024
nmodl-references
Public
nmodl references
C++
•
Apache License 2.0
•0•1•0•0•Updated Nov 1, 2024Nov 1, 2024
nmodl
Public
Code Generation Framework For NEURON MODeling Language
hpc dsl neuroscience compilers code-generation neuron-simulator nmodl
C++
•
Apache License 2.0
•15•56•168•23•Updated Nov 1, 2024Nov 1, 2024
nexus
Public
Blue Brain Nexus - A knowledge graph for data-driven science
scala nexus provenance knowledge-graph shacl
Scala
•
Apache License 2.0
•74•280•377•0•Updated Nov 1, 2024Nov 1, 2024
lnmc-nwb-conversion-validator
Public
Quality control for the IGOR to NWB data conversion
Python
•
Apache License 2.0
•0•0•0•0•Updated Nov 1, 2024Nov 1, 2024
bbp-token-fetch
Public
Fetching and automatic refreshing of the Nexus token using Keycloak
database atlas
Python
•
Apache License 2.0
•0•1•0•0•Updated Nov 1, 2024Nov 1, 2024
BluePyOpt
Public
Blue Brain Python Optimisation Library
python cross-platform genetic-algorithm biological-simulations neuroscience computational-neuroscience evolutionary-algorithms neurons electrophysiology modelling
Python
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Other
•97•199•18•2•Updated Nov 1, 2024Nov 1, 2024
BluePyMM
Public
Blue Brain Python Cell Model Management
Python
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Other
•9•13•34•1•Updated Nov 1, 2024Nov 1, 2024
aws-costs
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Oct 31, 2024Oct 31, 2024
zirkel
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Oct 31, 2024Oct 31, 2024
gitlab-pipelines
Public
Apache License 2.0
•0•0•0•0•Updated Oct 31, 2024Oct 31, 2024
cvf
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Oct 31, 2024Oct 31, 2024
snap
Public
The Blue Brain Pythonic Simulation and Network Analysis Productivity layer
analysis simulation modeling
Python
•
GNU Lesser General Public License v3.0
•10•19•9•7•Updated Oct 31, 2024Oct 31, 2024
spack
Public
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
Python
•
Other
•2.3k•9•2•43•Updated Oct 31, 2024Oct 31, 2024
nexus-forge
Public
Building and Using Knowledge Graphs made easy
data-science rdf knowledge-graph json-ld data-management shacl knowledge-engineering knowledgegraph
Python
•
GNU Lesser General Public License v3.0
•19•39•49•7•Updated Oct 31, 2024Oct 31, 2024
hpc-resource-provisioner
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Oct 31, 2024Oct 31, 2024
libsonatareport
Public
C++
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Other
•2•2•1•1•Updated Oct 31, 2024Oct 31, 2024
HighFive
Public
HighFive - Header-only C++ HDF5 interface
C++
•
Boost Software License 1.0
•160•685•48•3•Updated Oct 30, 2024Oct 30, 2024
neurodamus
Public
A BBP Simulation Control application for NEURON
simulation cellular neuron-simulations brain
Python
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Apache License 2.0
•8•9•9•6•Updated Oct 30, 2024Oct 30, 2024
scholarag
Public
Scientific literature RAG
Python
•
Apache License 2.0
•0•1•0•0•Updated Oct 30, 2024Oct 30, 2024
scholaretl
Public
Scientific literature parsing tools
Python
•
Apache License 2.0
•0•3•0•0•Updated Oct 30, 2024Oct 30, 2024
connectome-manipulator
Public
A connectome manipulation framework for SONATA circuits
experiment build circuit visualize
Python
•
Apache License 2.0
•2•2•1•1•Updated Oct 29, 2024Oct 29, 2024
experimental-protocol-fetcher
Public
Methods for retrieval of the experimental protocols used in the creation of ME-Model-s
database
Python
•
Apache License 2.0
•0•1•0•0•Updated Oct 29, 2024Oct 29, 2024
open-data-registry
Public
A registry of publicly available datasets on AWS
Python
•
Apache License 2.0
•910•1•0•0•Updated Oct 29, 2024Oct 29, 2024
MultiscaleRun
Public
Python package to run brain cells simulation at different scales
hpc neuroscience simulation-framework supercomputing molecular-modeling
Jupyter Notebook
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GNU Lesser General Public License v3.0
•0•1•5•3•Updated Oct 29, 2024Oct 29, 2024