[GR-36526] Handle relative path issue for tools.

substratevm/src/com.oracle.svm.core/src/com/oracle/svm/core/heap/UnknownObjectField.java

@@ -40,6 +40,10 @@
  *
  * It is assumed that a field of type c may hold a reference to any subtype of c. It is also assumed
  * that any subtype of c is instantiated.
+ *
+ * This annotation is only necessary during the image build. It prevents the static analysis from
+ * wrongly constant-folding a value that is initialized late during the image build and therefore
+ * not available during analysis.
  */
 @Retention(RetentionPolicy.RUNTIME)
 @Target(ElementType.FIELD)

substratevm/src/com.oracle.svm.core/src/com/oracle/svm/core/heap/UnknownPrimitiveField.java

@@ -35,7 +35,13 @@
 
 import com.oracle.svm.core.BuildPhaseProvider.AfterAnalysis;
 
-/** For fields with this annotation no static analysis is done. */
+/**
+ * For fields with this annotation no static analysis is done.
+ *
+ * This annotation is only necessary during the image build. It prevents the static analysis from
+ * wrongly constant-folding a value that is initialized late during the image build and therefore
+ * not available during analysis.
+ */
 @Retention(RetentionPolicy.RUNTIME)
 @Target(ElementType.FIELD)
 @Platforms(Platform.HOSTED_ONLY.class)

tools/src/com.oracle.truffle.tools.coverage/src/com/oracle/truffle/tools/coverage/impl/CoverageInstrument.java

@@ -108,6 +108,15 @@ public Output apply(String s) {
     private CoverageTracker tracker;
     private Boolean enabled;
 
+    /*
+     * Guest languages could change the working directory of the current process, The JVM assumes
+     * that the working directory does not change. When this assumption is broken relative file
+     * paths no longer work correctly. For this reason we save the absolute path to the output file
+     * at the very start so that we avoid issues of broken relative paths See GR-36526 for more
+     * context.
+     */
+    private String absoluteOutputPath;
+
     public static CoverageTracker getTracker(Engine engine) {
         Instrument instrument = engine.getInstruments().get(ID);
         if (instrument == null) {
@@ -123,11 +132,10 @@ public static void setFactory(Function<Env, CoverageTracker> factory) {
         CoverageInstrument.factory = factory;
     }
 
-    protected static PrintStream chooseOutputStream(TruffleInstrument.Env env, OptionKey<String> option) {
+    protected static PrintStream chooseOutputStream(Env env, String absoluteOutputPath) {
         try {
-            if (option.hasBeenSet(env.getOptions())) {
-                final String outputPath = option.getValue(env.getOptions());
-                final File file = new File(outputPath);
+            if (absoluteOutputPath != null) {
+                final File file = new File(absoluteOutputPath);
                 new PrintStream(env.out()).println("Printing output to " + file.getAbsolutePath());
                 return new PrintStream(new FileOutputStream(file));
             } else {
@@ -171,6 +179,9 @@ protected void onCreate(Env env) {
         enabled = ENABLED.getValue(options);
         if (enabled) {
             tracker.start(new CoverageTracker.Config(getSourceSectionFilter(options), Count.getValue(options)));
+            if (CoverageInstrument.OUTPUT_FILE.hasBeenSet(env.getOptions())) {
+                absoluteOutputPath = new File(CoverageInstrument.OUTPUT_FILE.getValue(env.getOptions())).getAbsolutePath();
+            }
         }
     }
 
@@ -180,7 +191,7 @@ protected void onFinalize(Env env) {
             SourceCoverage[] coverage = tracker.getCoverage();
             final OptionValues options = env.getOptions();
             final boolean strictLines = StrictLines.getValue(options);
-            PrintStream out = chooseOutputStream(env, OUTPUT_FILE);
+            PrintStream out = chooseOutputStream(env, absoluteOutputPath);
             switch (OUTPUT.getValue(options)) {
                 case HISTOGRAM:
                     new CoverageCLI(out, coverage, strictLines).printHistogramOutput();

tools/src/com.oracle.truffle.tools.profiler/src/com/oracle/truffle/tools/profiler/impl/CPUSamplerCLI.java

@@ -45,15 +45,15 @@
 import org.graalvm.options.OptionStability;
 import org.graalvm.options.OptionType;
 import org.graalvm.options.OptionValues;
+import org.graalvm.shadowed.org.json.JSONArray;
+import org.graalvm.shadowed.org.json.JSONObject;
 
 import com.oracle.truffle.api.Option;
 import com.oracle.truffle.api.TruffleContext;
 import com.oracle.truffle.api.instrumentation.TruffleInstrument;
 import com.oracle.truffle.tools.profiler.CPUSampler;
 import com.oracle.truffle.tools.profiler.CPUSamplerData;
 import com.oracle.truffle.tools.profiler.ProfilerNode;
-import org.graalvm.shadowed.org.json.JSONArray;
-import org.graalvm.shadowed.org.json.JSONObject;
 
 @Option.Group(CPUSamplerInstrument.ID)
 class CPUSamplerCLI extends ProfilerCLI {
@@ -221,8 +221,8 @@ public int[] apply(String s) {
     @Option(name = "SampleContextInitialization", help = "Enables sampling of code executed during context initialization", category = OptionCategory.EXPERT, stability = OptionStability.STABLE) //
     static final OptionKey<Boolean> SAMPLE_CONTEXT_INITIALIZATION = new OptionKey<>(false);
 
-    static void handleOutput(TruffleInstrument.Env env, CPUSampler sampler) {
-        PrintStream out = chooseOutputStream(env);
+    static void handleOutput(TruffleInstrument.Env env, CPUSampler sampler, String absoluteOutputPath) {
+        PrintStream out = chooseOutputStream(env, absoluteOutputPath);
         Map<TruffleContext, CPUSamplerData> data = sampler.getData();
         OptionValues options = env.getOptions();
         switch (chooseOutput(options)) {
@@ -242,12 +242,10 @@ static void handleOutput(TruffleInstrument.Env env, CPUSampler sampler) {
         }
     }
 
-    private static PrintStream chooseOutputStream(TruffleInstrument.Env env) {
-        OptionValues options = env.getOptions();
-        final String outputPath = getOutputPath(env, options);
-        if (outputPath != null) {
+    private static PrintStream chooseOutputStream(TruffleInstrument.Env env, String absoluteOutputPath) {
+        if (absoluteOutputPath != null) {
             try {
-                final File file = new File(outputPath);
+                final File file = new File(absoluteOutputPath);
                 new PrintStream(env.out()).println("Printing output to " + file.getAbsolutePath());
                 return new PrintStream(new FileOutputStream(file));
             } catch (FileNotFoundException e) {
@@ -257,9 +255,9 @@ private static PrintStream chooseOutputStream(TruffleInstrument.Env env) {
         return new PrintStream(env.out());
     }
 
-    private static String getOutputPath(TruffleInstrument.Env env, OptionValues options) {
+    static String getOutputPath(OptionValues options) {
         if (OUTPUT_FILE.hasBeenSet(options)) {
-            return OUTPUT_FILE.getValue(env.getOptions());
+            return OUTPUT_FILE.getValue(options);
         }
         if (ENABLED.getValue(options).output == Output.FLAMEGRAPH) {
             return DEFAULT_FLAMEGRAPH_FILE;

tools/src/com.oracle.truffle.tools.profiler/src/com/oracle/truffle/tools/profiler/impl/CPUSamplerInstrument.java

@@ -27,6 +27,7 @@
 import static com.oracle.truffle.tools.profiler.impl.CPUSamplerCLI.GATHER_HIT_TIMES;
 import static com.oracle.truffle.tools.profiler.impl.CPUSamplerCLI.SAMPLE_CONTEXT_INITIALIZATION;
 
+import java.io.File;
 import java.lang.reflect.Method;
 
 import org.graalvm.options.OptionDescriptors;
@@ -61,9 +62,18 @@ public CPUSamplerInstrument() {
      * @since 0.30
      */
     public static final String ID = "cpusampler";
+    private static final ProfilerToolFactory<CPUSampler> factory = getDefaultFactory();
     static final String VERSION = "0.5.0";
     private CPUSampler sampler;
-    private static final ProfilerToolFactory<CPUSampler> factory = getDefaultFactory();
+
+    /*
+     * Guest languages could change the working directory of the current process, The JVM assumes
+     * that the working directory does not change. When this assumption is broken relative file
+     * paths no longer work correctly. For this reason we save the absolute path to the output file
+     * at the very start so that we avoid issues of broken relative paths See GR-36526 for more
+     * context.
+     */
+    private String absoluteOutputPath;
 
     @SuppressWarnings("unchecked")
     private static ProfilerToolFactory<CPUSampler> getDefaultFactory() {
@@ -109,6 +119,8 @@ protected void onCreate(Env env) {
             sampler.setGatherSelfHitTimes(options.get(GATHER_HIT_TIMES));
             sampler.setSampleContextInitialization(options.get(SAMPLE_CONTEXT_INITIALIZATION));
             sampler.setCollecting(true);
+            String outputPath = CPUSamplerCLI.getOutputPath(options);
+            absoluteOutputPath = (outputPath != null) ? new File(outputPath).getAbsolutePath() : null;
         }
         env.registerService(sampler);
     }
@@ -142,7 +154,7 @@ protected void onFinalize(Env env) {
         OptionValues options = env.getOptions();
         CPUSamplerCLI.EnableOptionData enableOptionData = options.get(CPUSamplerCLI.ENABLED);
         if (enableOptionData.enabled) {
-            CPUSamplerCLI.handleOutput(env, sampler);
+            CPUSamplerCLI.handleOutput(env, sampler, absoluteOutputPath);
         }
     }
 

tools/src/com.oracle.truffle.tools.profiler/src/com/oracle/truffle/tools/profiler/impl/CPUTracerCLI.java

@@ -24,6 +24,9 @@
  */
 package com.oracle.truffle.tools.profiler.impl;
 
+import java.io.File;
+import java.io.FileNotFoundException;
+import java.io.FileOutputStream;
 import java.io.PrintStream;
 import java.util.ArrayList;
 import java.util.Collection;
@@ -36,12 +39,12 @@
 import org.graalvm.options.OptionKey;
 import org.graalvm.options.OptionStability;
 import org.graalvm.options.OptionType;
+import org.graalvm.shadowed.org.json.JSONArray;
+import org.graalvm.shadowed.org.json.JSONObject;
 
 import com.oracle.truffle.api.Option;
 import com.oracle.truffle.api.instrumentation.TruffleInstrument;
 import com.oracle.truffle.tools.profiler.CPUTracer;
-import org.graalvm.shadowed.org.json.JSONArray;
-import org.graalvm.shadowed.org.json.JSONObject;
 
 @Option.Group(CPUTracerInstrument.ID)
 class CPUTracerCLI extends ProfilerCLI {
@@ -101,8 +104,8 @@ public Output apply(String s) {
     @Option(name = "OutputFile", help = "Save output to the given file. Output is printed to standard output stream by default.", usageSyntax = "<path>", category = OptionCategory.USER, stability = OptionStability.STABLE) //
     static final OptionKey<String> OUTPUT_FILE = new OptionKey<>("");
 
-    public static void handleOutput(TruffleInstrument.Env env, CPUTracer tracer) {
-        PrintStream out = chooseOutputStream(env, OUTPUT_FILE);
+    public static void handleOutput(TruffleInstrument.Env env, CPUTracer tracer, String absoluteOutputPath) {
+        PrintStream out = chooseOutputStream(env, absoluteOutputPath);
         switch (env.getOptions().get(OUTPUT)) {
             case HISTOGRAM:
                 printTracerHistogram(out, tracer);
@@ -113,6 +116,19 @@ public static void handleOutput(TruffleInstrument.Env env, CPUTracer tracer) {
         }
     }
 
+    protected static PrintStream chooseOutputStream(TruffleInstrument.Env env, String absoluteOutputPath) {
+        try {
+            if (absoluteOutputPath != null) {
+                final File file = new File(absoluteOutputPath);
+                return new PrintStream(new FileOutputStream(file));
+            } else {
+                return new PrintStream(env.out());
+            }
+        } catch (FileNotFoundException e) {
+            throw handleFileNotFound();
+        }
+    }
+
     private static void printTracerJson(PrintStream out, CPUTracer tracer) {
         JSONObject output = new JSONObject();
         output.put("tool", CPUTracerInstrument.ID);

tools/src/com.oracle.truffle.tools.profiler/src/com/oracle/truffle/tools/profiler/impl/CPUTracerInstrument.java

@@ -24,6 +24,7 @@
  */
 package com.oracle.truffle.tools.profiler.impl;
 
+import java.io.File;
 import java.io.PrintStream;
 import java.lang.reflect.Method;
 
@@ -58,11 +59,19 @@ public CPUTracerInstrument() {
      * @since 0.30
      */
     public static final String ID = "cputracer";
+    private static final ProfilerToolFactory<CPUTracer> factory = getDefaultFactory();
 
     static final String VERSION = "0.3.0";
     private boolean enabled;
     private CPUTracer tracer;
-    private static final ProfilerToolFactory<CPUTracer> factory = getDefaultFactory();
+    /*
+     * Guest languages could change the working directory of the current process, The JVM assumes
+     * that the working directory does not change. When this assumption is broken relative file
+     * paths no longer work correctly. For this reason we save the absolute path to the output file
+     * at the very start so that we avoid issues of broken relative paths See GR-36526 for more
+     * context.
+     */
+    String absoluteOutputPath;
 
     @SuppressWarnings("unchecked")
     private static ProfilerToolFactory<CPUTracer> getDefaultFactory() {
@@ -111,6 +120,10 @@ protected void onCreate(Env env) {
                 return;
             }
             tracer.setCollecting(true);
+            if (CPUTracerCLI.OUTPUT_FILE.hasBeenSet(env.getOptions())) {
+                final String outputPath = CPUTracerCLI.OUTPUT_FILE.getValue(env.getOptions());
+                absoluteOutputPath = new File(outputPath).getAbsolutePath();
+            }
         }
         env.registerService(tracer);
     }
@@ -145,7 +158,7 @@ protected OptionDescriptors getOptionDescriptors() {
     @Override
     protected void onFinalize(Env env) {
         if (enabled) {
-            CPUTracerCLI.handleOutput(env, tracer);
+            CPUTracerCLI.handleOutput(env, tracer, absoluteOutputPath);
         }
     }
 

tools/src/com.oracle.truffle.tools.profiler/src/com/oracle/truffle/tools/profiler/impl/ProfilerCLI.java

@@ -25,9 +25,6 @@
 package com.oracle.truffle.tools.profiler.impl;
 
 import java.io.File;
-import java.io.FileNotFoundException;
-import java.io.FileOutputStream;
-import java.io.PrintStream;
 import java.nio.file.Path;
 import java.nio.file.Paths;
 import java.util.ArrayList;
@@ -36,15 +33,13 @@
 import java.util.function.Predicate;
 import java.util.regex.Pattern;
 
-import org.graalvm.options.OptionKey;
+import org.graalvm.shadowed.org.json.JSONObject;
 
 import com.oracle.truffle.api.exception.AbstractTruffleException;
 import com.oracle.truffle.api.instrumentation.SourceSectionFilter;
 import com.oracle.truffle.api.instrumentation.StandardTags;
-import com.oracle.truffle.api.instrumentation.TruffleInstrument;
 import com.oracle.truffle.api.source.Source;
 import com.oracle.truffle.api.source.SourceSection;
-import org.graalvm.shadowed.org.json.JSONObject;
 
 abstract class ProfilerCLI {
 
@@ -237,20 +232,6 @@ public int hashCode() {
         }
     }
 
-    protected static PrintStream chooseOutputStream(TruffleInstrument.Env env, OptionKey<String> option) {
-        try {
-            if (option.hasBeenSet(env.getOptions())) {
-                final String outputPath = option.getValue(env.getOptions());
-                final File file = new File(outputPath);
-                return new PrintStream(new FileOutputStream(file));
-            } else {
-                return new PrintStream(env.out());
-            }
-        } catch (FileNotFoundException e) {
-            throw handleFileNotFound();
-        }
-    }
-
     protected static AbstractTruffleException handleFileNotFound() {
         return new AbstractTruffleException() {
             static final long serialVersionUID = -1;