Merge branch 'master' into experimental

openworm · Jun 25, 2024 · d6788cf · d6788cf
2 parents 1b076b7 + a058860
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diff --git a/README.md b/README.md
@@ -9,27 +9,33 @@ c302 is a framework for generating network models in NeuroML 2 based on *C. eleg
 
 ![c302 structure](https://raw.githubusercontent.com/openworm/CElegansNeuroML/master/CElegans/pythonScripts/c302/images/c302.png)
 
-It uses information on the synaptic connectivity of the network (from [here](https://github.com/openworm/c302/blob/master/c302/data/CElegansNeuronTables.xls)) and uses [libNeuroML](https://github.com/NeuralEnsemble/libNeuroML) to generate a network in valid NeuroML, which can be run in [jNeuroML](https://github.com/NeuroML/jNeuroML) or [pyNeuroML](https://github.com/NeuroML/pyNeuroML).
+It uses information on the synaptic connectivity of the network (from [here](https://github.com/openworm/c302/blob/master/c302/data)) and uses [libNeuroML](https://github.com/NeuralEnsemble/libNeuroML) to generate a network in valid NeuroML, which can be run in [jNeuroML](https://github.com/NeuroML/jNeuroML) or [pyNeuroML](https://github.com/NeuroML/pyNeuroML).
 
-**The c302 paper has recently been published!**
+**The c302 paper is out!**
 
 *c302: a multiscale framework for modelling the nervous system of Caenorhabditis elegans* Padraig Gleeson, David Lung, Radu Grosu, Ramin Hasani, Stephen D. Larson, [Phil. Trans. R. Soc. B 2018 373 20170379](http://rstb.royalsocietypublishing.org/content/373/1758/20170379); DOI: 10.1098/rstb.2017.0379.
 
 
 ### To install & test
 
-The full set of dependencies for c302 can be installed with the following (see also the [Travis-CI script](https://github.com/openworm/c302/blob/master/.travis.yml)):
+The full set of dependencies for c302 can be installed with the following (see also the [ci.yml](https://github.com/openworm/c302/blob/master/.github/workflows/ci.yml) and [non_omv.yml](https://github.com/openworm/c302/blob/master/.github/workflows/non_omv.yml) workflow files):
 
-    git clone https://github.com/openworm/c302.git
-    cd c302
-    pip install .
-    owm bundle remote --user add ow 'https://raw.githubusercontent.com/openworm/owmeta-bundles/master/index.json'
+```console
+git clone https://github.com/openworm/c302.git
+cd c302
+pip install .
+
+# The following can only be run on Mac and Linux. Note: c302 can be run without ownmeta fully installed
+owm bundle remote --user add ow 'https://raw.githubusercontent.com/openworm/owmeta-bundles/master/index.json'
+```
 
 This will install c302 as well as [pyNeuroML](https://github.com/NeuroML/pyNeuroML) and [owmeta](https://github.com/openworm/owmeta).
 
-To run the test.sh script, the Neuron simulator is also required, and should be installed as described [here](https://www.neuron.yale.edu/neuron/download).
+For Windows users a  virtual environment must be generated with Python 3.10 as any newer versions do not currently support owmeta.
+
+To run the test.sh script, the Neuron simulator is also required, and should be installed as described [here](https://www.neuron.yale.edu/neuron/download) (On Mac and Linux it can be installed with `pip install neuron`). 
 
-For Linux users, additional dependencies (OpenJDK 19 and Graphviz) are required to run the Usage Examples:
+For Linux users, additional dependencies (OpenJDK 19 and Graphviz) are required to run the usage examples:
 
     sudo apt-get install openjdk-19-jdk graphviz
 
@@ -81,7 +87,7 @@ Screenshots of a simulation with pyNeuroML of c302_B_Pharyngeal are shown below
 
 #### 1b) Run standard examples with Neuron
 
-The models can also be run using the Neuron simulator. This should be installed as outlined [here](https://www.neuron.yale.edu/neuron/download).
+The models can also be run using the Neuron simulator.  This should be installed as outlined [here](https://www.neuron.yale.edu/neuron/download). Note: running c302 with Neuron is not currently supported on Windows.
 
        cd examples
        pynml LEMS_c302_A_IClamp.xml -neuron   # Generate the Neuron files (Python/hoc/mod)

diff --git a/cells/ADAL_D.cell.nml b/cells/ADAL_D.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="ADAL">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="ADAL">
     <cell id="ADAL">
         <notes>Cell model created by c302 with custom electrical parameters</notes>
         <morphology id="morphology_ADAL">

diff --git a/cells/AIBL_D.cell.nml b/cells/AIBL_D.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="AIBL">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="AIBL">
     <cell id="AIBL">
         <notes>Cell model created by c302 with custom electrical parameters</notes>
         <morphology id="morphology_AIBL">

diff --git a/cells/DB5_D.cell.nml b/cells/DB5_D.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="DB5">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="DB5">
     <cell id="DB5">
         <notes>Cell model created by c302 with custom electrical parameters</notes>
         <morphology id="morphology_DB5">

diff --git a/cells/I1L_D.cell.nml b/cells/I1L_D.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="I1L">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="I1L">
     <cell id="I1L">
         <notes>Cell model created by c302 with custom electrical parameters</notes>
         <morphology id="morphology_I1L">

diff --git a/cells/I3_D.cell.nml b/cells/I3_D.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="I3">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="I3">
     <cell id="I3">
         <notes>Cell model created by c302 with custom electrical parameters</notes>
         <morphology id="morphology_I3">

diff --git a/cells/PVCR_D.cell.nml b/cells/PVCR_D.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="PVCR">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="PVCR">
     <cell id="PVCR">
         <notes>Cell model created by c302 with custom electrical parameters</notes>
         <morphology id="morphology_PVCR">

diff --git a/examples/c302_A_Full.net.nml b/examples/c302_A_Full.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_Full">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Full">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_A_IClamp.net.nml b/examples/c302_A_IClamp.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_IClamp">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_IClamp">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_A_Muscles.net.nml b/examples/c302_A_Muscles.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_Muscles">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Muscles">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_A_Oscillator.net.nml b/examples/c302_A_Oscillator.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_Oscillator">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Oscillator">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_A_Pharyngeal.net.nml b/examples/c302_A_Pharyngeal.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_Pharyngeal">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Pharyngeal">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_A_Social.net.nml b/examples/c302_A_Social.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_Social">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Social">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_A_Syns.net.nml b/examples/c302_A_Syns.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_A_Syns">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_A_Syns">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_B_Full.net.nml b/examples/c302_B_Full.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_Full">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_Full">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_B_IClamp.net.nml b/examples/c302_B_IClamp.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_IClamp">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_IClamp">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_B_Muscles.net.nml b/examples/c302_B_Muscles.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_Muscles">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_Muscles">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_B_Oscillator.net.nml b/examples/c302_B_Oscillator.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_Oscillator">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_Oscillator">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_B_Pharyngeal.net.nml b/examples/c302_B_Pharyngeal.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_Pharyngeal">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_Pharyngeal">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_B_Social.net.nml b/examples/c302_B_Social.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_Social">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_Social">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_B_Syns.net.nml b/examples/c302_B_Syns.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_B_Syns">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_B_Syns">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_C0_Full.net.nml b/examples/c302_C0_Full.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_C0_Full">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_C0_Full">
     <notes>
 
 Parameters and setting used to generate this network:

diff --git a/examples/c302_C0_IClamp.net.nml b/examples/c302_C0_IClamp.net.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="c302_C0_IClamp">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="c302_C0_IClamp">
     <notes>
 
 Parameters and setting used to generate this network: