Add uv to GitHub Actions (#58)

* Add uv to GitHub Actions * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update toml --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
opengeos · Sep 22, 2024 · 408cfc8 · 408cfc8
1 parent 2011566
commit 408cfc8
Show file tree

Hide file tree

Showing 10 changed files with 8,394 additions and 116 deletions.
diff --git a/.github/dependabot.yml b/.github/dependabot.yml
@@ -0,0 +1,19 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
+
+version: 2
+updates:
+  - package-ecosystem: "docker"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+  - package-ecosystem: "pip"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"
diff --git a/.github/workflows/docs-build.yml b/.github/workflows/docs-build.yml
@@ -1,40 +1,57 @@
 name: docs-build
+
 on:
     pull_request:
         branches:
             - master
+
 jobs:
-    deploy:
+    docs-build:
         runs-on: ubuntu-latest
+        strategy:
+            matrix:
+                python-version: ["3.12"]
+
         steps:
             - uses: actions/checkout@v4
-            - uses: actions/setup-python@v5
               with:
-                  python-version: "3.11"
-            - name: Install GDAL
-              run: |
-                  python -m pip install --upgrade pip
-                  pip install --no-cache-dir Cython
-                  pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL
-            - name: Test GDAL installation
-              run: |
-                  python -c "from osgeo import gdal"
-                  gdalinfo --version
+                  fetch-depth: 0
+
+            - name: Install uv
+              uses: astral-sh/setup-uv@v2
+              with:
+                  version: "0.4.12"
+                  enable-cache: true
+
+            - name: Set up Python ${{ matrix.python-version }}
+              run: uv python install ${{ matrix.python-version }}
+
             - name: Install dependencies
+              run: uv sync --python ${{ matrix.python-version }}
+
+            - name: Install optional dependencies
               run: |
-                  pip install --user -r requirements.txt -r requirements_dev.txt
-                  pip install .
-            - name: Discover typos with codespell
-              run: codespell --skip="*.csv,*.geojson,*.json,*.js,*.html,*cff,./.git" --ignore-words-list="aci,acount,acounts,fallow,hart,hist,nd,ned,ois,wqs,watermask"
-            - name: PKG-TEST
+                  uv pip install --find-links https://girder.github.io/large_image_wheels GDAL pyproj
+                  uv pip install pytest
+                  uv pip install -r requirements_dev.txt
+
+            - name: Test import
               run: |
-                  python -m unittest discover tests/
-            - name: Build docs
+                  uv run python -c "import geospatial; print('geospatial import successful')"
+                  uv run python -c "from osgeo import gdal; print('gdal import successful')"
+                  uv run gdalinfo --version
+
+            - name: Running pytest
               run: |
-                  pip install -r requirements_docs.txt
-                  mkdocs build
+                  uv run pytest . --verbose
+
+            - name: Install mkdocs
+              run: |
+                  uv pip install -r requirements_docs.txt
+                  uv run mkdocs build
+
             - name: Deploy to Netlify
-              uses: nwtgck/actions-netlify@v2.0
+              uses: nwtgck/actions-netlify@v3.0
               with:
                   publish-dir: "./site"
                   production-branch: master
@@ -46,4 +63,8 @@ jobs:
               env:
                   NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
                   NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
-              timeout-minutes: 10
+
+            - name: Cleanup
+              if: always()
+              run: |
+                  echo "Cleaning up resources."
diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
@@ -1,33 +1,51 @@
 name: docs
+
 on:
     push:
         branches:
             - master
+
 jobs:
     deploy:
         runs-on: ubuntu-latest
+        strategy:
+            matrix:
+                python-version: ["3.12"]
+
         steps:
             - uses: actions/checkout@v4
-            - uses: actions/setup-python@v5
               with:
-                  python-version: "3.12"
-            - name: Install GDAL
+                  fetch-depth: 0
+
+            - name: Install uv
+              uses: astral-sh/setup-uv@v2
+              with:
+                  version: "0.4.12"
+                  enable-cache: true
+
+            - name: Set up Python ${{ matrix.python-version }}
+              run: uv python install ${{ matrix.python-version }}
+
+            - name: Install dependencies
+              run: uv sync --python ${{ matrix.python-version }}
+
+            - name: Install optional dependencies
               run: |
-                  python -m pip install --upgrade pip
-                  pip install --no-cache-dir Cython
-                  pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL
-            - name: Test GDAL installation
+                  uv pip install --find-links https://girder.github.io/large_image_wheels GDAL pyproj
+                  uv pip install pytest
+                  uv pip install -r requirements_dev.txt
+
+            - name: Test import
               run: |
-                  python -c "from osgeo import gdal"
-                  gdalinfo --version
-            - name: Install dependencies
+                  uv run python -c "import geospatial; print('geospatial import successful')"
+                  uv run python -c "from osgeo import gdal; print('gdal import successful')"
+                  uv run gdalinfo --version
+
+            - name: Running pytest
               run: |
-                  pip install --user -r requirements.txt -r requirements_dev.txt
-                  pip install .
-            - name: Discover typos with codespell
-              run: codespell --skip="*.csv,*.geojson,*.json,*.js,*.html,*cff,./.git" --ignore-words-list="aci,acount,acounts,fallow,hart,hist,nd,ned,ois,wqs,watermask"
-            - name: PKG-TEST
+                  uv run pytest . --verbose
+
+            - name: Install mkdocs
               run: |
-                  python -m unittest discover tests/
-            - run: pip install -r requirements_docs.txt
-            - run: mkdocs gh-deploy --force
+                  uv pip install -r requirements_docs.txt
+                  uv run mkdocs gh-deploy --force
diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
@@ -9,30 +9,30 @@ on:
 name: macOS build
 jobs:
     test-macOS:
-        runs-on: ${{ matrix.os }}
-        name: ${{ matrix.os }} (${{ matrix.python-version}})
+        runs-on: ${{ matrix.config.os }}
+        name: ${{ matrix.config.os }} (${{ matrix.config.py }})
         strategy:
             fail-fast: false
             matrix:
-                os: ["macOS-latest"]
-                python-version: ["3.12"]
+                config:
+                    - { os: macOS-latest, py: "3.12" }
+        env:
+            SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
         steps:
-            - name: Checkout code
-              uses: actions/checkout@v4
+            - uses: actions/checkout@v4
 
-            - name: Set up Python
-              uses: actions/setup-python@v5
+            - name: Install uv
+              uses: astral-sh/setup-uv@v2
               with:
-                  python-version: ${{ matrix.python-version}}
-            - name: Install GDAL
-              run: |
-                  brew install gdal
-            - name: Test GDAL installation
-              run: |
-                  gdalinfo --version
+                  version: "0.4.12"
+                  enable-cache: true
+
+            - name: Set up Python ${{ matrix.config.py }}
+              run: uv python install ${{ matrix.config.py }}
+
             - name: Install dependencies
+              run: uv sync --python ${{ matrix.config.py }}
+
+            - name: Test import
               run: |
-                  python -m pip install --upgrade pip
-                  pip install --no-cache-dir Cython
-                  pip install -r requirements.txt
-                  pip install .
+                  uv run python -c "import geospatial; print('geospatial import successful')"
diff --git a/.github/workflows/ubuntu.yml b/.github/workflows/ubuntu.yml
@@ -1,38 +1,46 @@
+name: TestingUbuntu
+
 on:
     push:
-        branches:
-            - master
+        branches: ["master"]
     pull_request:
-        branches:
-            - master
+        branches: ["master"]
 
-name: Linux build
 jobs:
     test-ubuntu:
         runs-on: ubuntu-latest
+
         strategy:
             fail-fast: false
             matrix:
                 python-version: ["3.9", "3.10", "3.11", "3.12"]
+
         steps:
             - uses: actions/checkout@v4
-            - name: Set up Python
-              uses: actions/setup-python@v5
+
+            - name: Install uv
+              uses: astral-sh/setup-uv@v2
               with:
-                  python-version: ${{ matrix.python-version }}
-            - name: Install GDAL
-              run: |
-                  python -m pip install --upgrade pip
-                  pip install --no-cache-dir Cython
-                  pip install --find-links=https://girder.github.io/large_image_wheels --no-cache GDAL
-            - name: Test GDAL installation
-              run: |
-                  python -c "from osgeo import gdal"
-                  gdalinfo --version
+                  version: "0.4.12"
+                  enable-cache: true
+
+            - name: Set up Python ${{ matrix.python-version }}
+              run: uv python install ${{ matrix.python-version }}
+
             - name: Install dependencies
+              run: uv sync --python ${{ matrix.python-version }}
+
+            - name: Install optional dependencies
               run: |
-                  pip install -r requirements.txt -r requirements_dev.txt
-                  pip install .
-            - name: PKG-TEST
+                  uv pip install --find-links https://girder.github.io/large_image_wheels gdal pyproj
+                  uv pip install pytest
+
+            - name: Test import
+              run: |
+                  uv run python -c "import geospatial; print('geospatial import successful')"
+                  uv run python -c "from osgeo import gdal; print('gdal import successful')"
+                  uv run gdalinfo --version
+
+            - name: Running pytest
               run: |
-                  python -m unittest discover tests/
+                  uv run pytest . --verbose
diff --git a/.github/workflows/windows.yml b/.github/workflows/windows.yml
@@ -1,33 +1,34 @@
+name: "TestingWindows"
+
 on:
     push:
         branches:
             - master
     pull_request:
         branches:
             - master
-
-name: Windows build
 jobs:
     test-windows:
         runs-on: windows-latest
+        strategy:
+            matrix:
+                python-version: ["3.12"]
+
         steps:
             - uses: actions/checkout@v4
-            - name: Install miniconda
-              uses: conda-incubator/setup-miniconda@v3
+
+            - name: Install uv
+              uses: astral-sh/setup-uv@v2
               with:
-                  auto-activate-base: true
-                  python-version: "3.12"
-            - name: Install GDAL
-              run: |
-                  conda install -c conda-forge gdal --yes
-            - name: Test GDAL installation
-              run: |
-                  python -c "from osgeo import gdal"
-                  gdalinfo --version
+                  version: "0.4.12"
+                  enable-cache: true
+
+            - name: Set up Python ${{ matrix.python-version }}
+              run: uv python install ${{ matrix.python-version }}
+
             - name: Install dependencies
+              run: uv sync --python ${{ matrix.python-version }}
+
+            - name: Test import
               run: |
-                  pip install --upgrade setuptools
-                  python -m pip install --upgrade pip
-                  pip install --no-cache-dir Cython
-                  pip install -r requirements.txt
-                  pip install .
+                  uv run python -c "import geospatial; print('geospatial import successful')"
diff --git a/docs/index.ipynb b/docs/index.ipynb
@@ -29,24 +29,23 @@
     "\n",
     "## Installation\n",
     "\n",
-    "### Mamba\n",
+    "### uv\n",
     "\n",
-    "Installing commonly used packages for geospatial analysis and data visualization with only one command.\n",
+    "[uv](https://docs.astral.sh/uv/) us an extremely fast Python package and project manager, written in Rust. It is designed to be a drop-in replacement for pip. You can install `geospatial` using `uv` as follows:\n",
     "\n",
     "```bash\n",
-    "mamba install -c conda-forge geospatial\n",
+    "uv pip install geospatial\n",
+    "uv pip install --find-links https://girder.github.io/large_image_wheels gdal pdal pyproj \n",
     "```\n",
     "\n",
-    "### uv\n",
+    "### Mamba\n",
     "\n",
-    "[uv](https://docs.astral.sh/uv/) us an extremely fast Python package and project manager, written in Rust. It is designed to be a drop-in replacement for pip. You can install `geospatial` using `uv` as follows:\n",
+    "Installing commonly used packages for geospatial analysis and data visualization with only one command.\n",
     "\n",
     "```bash\n",
-    "uv install geospatial\n",
-    "uv pip install gdal pdal --find-links https://girder.github.io/large_image_wheels\n",
+    "mamba install -c conda-forge geospatial\n",
     "```\n",
     "\n",
-    "\n",
     "## Video Tutorial\n",
     "\n",
     "[![Introducing geospatial](images/thumbnail.png)](https://youtu.be/t7eJKQwacOE \"Introducing geospatial\")"
@@ -61,7 +60,7 @@
     "\n",
     "The [recipe](https://github.com/conda-forge/geospatial-feedstock/blob/main/recipe/meta.yaml) of the geospatial Python package on the conda-forge channel:\n",
     "\n",
-    "    - python >=3.8\n",
+    "    - python >=3.9\n",
     "    - apache-sedona\n",
     "    - bokeh\n",
     "    - cartopy\n",