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R studio fixes #402

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merged 3 commits into from
Feb 5, 2024
Merged

R studio fixes #402

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82d55e1
Fix library path version
atheo89 Feb 5, 2024
d245412
Fix image stream annotations for R Studio notebooks: image-desc and n…
atheo89 Feb 5, 2024
ad0de68
Fix persmissions error on the R library paths
atheo89 Feb 5, 2024
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4 changes: 2 additions & 2 deletions manifests/base/rstudio-gpu-notebook-imagestream.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ metadata:
annotations:
opendatahub.io/notebook-image-url: "https://github.com/opendatahub-io/notebooks/tree/main/rstudio"
opendatahub.io/notebook-image-name: "CUDA - R Studio"
opendatahub.io/notebook-image-desc: "R Studio workbench image, allows to integrated development environment for R, a programming language for statistical computing and graphics."
opendatahub.io/notebook-image-desc: "R Studio Workbench image with an integrated development environment for R, a programming language designed for statistical computing and graphics."
opendatahub.io/notebook-image-order: "10"
opendatahub.io/recommended-accelerators: '["nvidia.com/gpu"]'
name: rstudio-gpu-notebook
Expand All @@ -17,7 +17,7 @@ spec:
tags:
# N Version of the image
- annotations:
opendatahub.io/notebook-software: '[{"name":"CUDA","version":"11.8"},{"name":"Python","version":"v3.9"}]'
opendatahub.io/notebook-software: '[{"name":"CUDA","version":"11.8"},{"name":"R","version":"v4.3"},{"name":"Python","version":"v3.9"}]'
opendatahub.io/notebook-python-dependencies: '[{"name":"r-studio","version":"4.3"}]'
openshift.io/imported-from: quay.io/opendatahub/workbench-images
opendatahub.io/workbench-image-recommended: 'true'
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4 changes: 2 additions & 2 deletions manifests/base/rstudio-notebook-imagestream.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ metadata:
annotations:
opendatahub.io/notebook-image-url: "https://github.com/opendatahub-io/notebooks/tree/main/rstudio"
opendatahub.io/notebook-image-name: "R Studio"
opendatahub.io/notebook-image-desc: "R Studio workbench image, allows to integrated development environment for R, a programming language for statistical computing and graphics."
opendatahub.io/notebook-image-desc: "R Studio Workbench image with an integrated development environment for R, a programming language designed for statistical computing and graphics."
opendatahub.io/notebook-image-order: "9"
name: rstudio-notebook
spec:
Expand All @@ -16,7 +16,7 @@ spec:
tags:
# N Version of the image
- annotations:
opendatahub.io/notebook-software: '[{"name":"Python","version":"v3.9"}]'
opendatahub.io/notebook-software: '[{"name":"R","version":"v4.3"},{"name":"Python","version":"v3.9"}]'
opendatahub.io/notebook-python-dependencies: '[{"name":"r-studio","version":"4.3"}]'
openshift.io/imported-from: quay.io/opendatahub/workbench-images
opendatahub.io/workbench-image-recommended: 'true'
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4 changes: 3 additions & 1 deletion rstudio/c9s-python-3.9/Dockerfile
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Expand Up @@ -27,10 +27,12 @@ RUN yum install -y yum-utils && \
yum -y clean all --enablerepo='*'

# set R library to default (used in install.r from littler)
RUN chmod -R a+w /usr/lib64/R/library
ENV LIBLOC /usr/lib64/R/library

# set User R Library path
ENV R_LIBS_USER /opt/app-root/src/Rpackages/4.2
RUN mkdir -p /opt/app-root/src/Rpackages/4.3 && chmod -R a+w /opt/app-root/src/Rpackages/4.3
ENV R_LIBS_USER /opt/app-root/src/Rpackages/4.3

WORKDIR /tmp/

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