python scripts are in tools/python3

ports/py-wheel/portfile.cmake

@@ -10,8 +10,4 @@ vcpkg_python_build_and_install_wheel(SOURCE_PATH "${SOURCE_PATH}" OPTIONS -x)
 
 vcpkg_install_copyright(FILE_LIST "${SOURCE_PATH}/LICENSE.txt")
 
-if(NOT VCPKG_TARGET_IS_WINDOWS)
-  vcpkg_copy_tools(TOOL_NAMES wheel DESTINATION "${CURRENT_PACKAGES_DIR}/tools/python3" AUTO_CLEAN)
-endif()
-
 set(VCPKG_POLICY_EMPTY_INCLUDE_FOLDER enabled)

ports/py-wheel/vcpkg.json

@@ -1,6 +1,7 @@
 {
   "name": "py-wheel",
   "version": "0.41.3",
+  "port-version": 1,
   "description": "The official binary distribution format for Python",
   "homepage": "https://github.com/pypa/wheel",
   "license": "MIT",

ports/python3/0016-undup-ffi-symbols.patch

@@ -0,0 +1,14 @@
+diff --git a/Modules/_ctypes/malloc_closure.c b/Modules/_ctypes/malloc_closure.c
+index 788bae6a9..3938f79db 100644
+--- a/Modules/_ctypes/malloc_closure.c
++++ b/Modules/_ctypes/malloc_closure.c
+@@ -11,6 +11,9 @@
+ #endif
+ #include "ctypes.h"
+
++#undef Py_ffi_closure_alloc
++#undef Py_ffi_closure_free
++
+ /* BLOCKSIZE can be adjusted.  Larger blocksize will take a larger memory
+    overhead, but allocate less blocks from the system.  It may be that some
+    systems have a limit of how many mmap'd blocks can be open.

ports/python3/0018-fix-sysconfig-include.patch

@@ -1,15 +1,18 @@
 diff --git a/Lib/sysconfig.py b/Lib/sysconfig.py
-index ebe371182..e351df7da 100644
+index ebe3711..b127603 100644
 --- a/Lib/sysconfig.py
 +++ b/Lib/sysconfig.py
-@@ -51,8 +51,8 @@
-         'platstdlib': '{base}/Lib',
-         'purelib': '{base}/Lib/site-packages',
-         'platlib': '{base}/Lib/site-packages',
--        'include': '{installed_base}/Include',
--        'platinclude': '{installed_base}/Include',
-+        'include': '{installed_base}/../../include/python{py_version_short}{abiflags}',
-+        'platinclude': '{installed_base}/../../include/python{py_version_short}{abiflags}',
-         'scripts': '{base}/Scripts',
+@@ -30,10 +30,10 @@
+         'purelib': '{base}/lib/python{py_version_short}/site-packages',
+         'platlib': '{platbase}/{platlibdir}/python{py_version_short}/site-packages',
+         'include':
+-            '{installed_base}/include/python{py_version_short}{abiflags}',
++            '{installed_base}/../../include/python{py_version_short}{abiflags}',
+         'platinclude':
+-            '{installed_platbase}/include/python{py_version_short}{abiflags}',
+-        'scripts': '{base}/bin',
++            '{installed_platbase}/../../include/python{py_version_short}{abiflags}',
++        'scripts': '{base}/tools/python3',
          'data': '{base}',
          },
+     'posix_home': {

ports/python3/portfile.cmake

@@ -33,6 +33,7 @@ set(PATCHES
     0012-force-disable-modules.patch
     0014-fix-get-python-inc-output.patch
     0015-dont-use-WINDOWS-def.patch
+    0016-undup-ffi-symbols.patch # Required for lld-link.
     0018-fix-sysconfig-include.patch
 )
 
@@ -376,4 +377,11 @@ if (NOT VCPKG_TARGET_IS_WINDOWS)
     endif()
 endif()
 
-configure_file("${CMAKE_CURRENT_LIST_DIR}/vcpkg-port-config.cmake" "${CURRENT_PACKAGES_DIR}/share/python3/vcpkg-port-config.cmake" @ONLY)
+if(VCPKG_TARGET_IS_WINDOWS)
+  vcpkg_replace_string("${CURRENT_PACKAGES_DIR}/tools/python3/Lib/distutils/command/build_ext.py" "'libs'" "'../../lib'")
+else()
+  vcpkg_replace_string("${CURRENT_PACKAGES_DIR}/lib/python3.${PYTHON_VERSION_MINOR}/distutils/command/build_ext.py" "'libs'" "'../../lib'")
+  file(COPY_FILE "${CURRENT_PACKAGES_DIR}/tools/python3/python3.${PYTHON_VERSION_MINOR}" "${CURRENT_PACKAGES_DIR}/tools/python3/python3")
+endif()
+
+configure_file("${CMAKE_CURRENT_LIST_DIR}/vcpkg-port-config.cmake" "${CURRENT_PACKAGES_DIR}/share/python3/vcpkg-port-config.cmake" @ONLY)

ports/python3/vcpkg.json

@@ -1,7 +1,7 @@
 {
   "name": "python3",
   "version": "3.11.5",
-  "port-version": 3,
+  "port-version": 5,
   "description": "The Python programming language",
   "homepage": "https://github.com/python/cpython",
   "license": "Python-2.0",