Add initial TES integration test (Funnel) #54

	name: Linting and testing

	# on: [pull_request]
	on: push

	jobs:
	test:
	runs-on: ubuntu-latest

	strategy:
	fail-fast: false
	matrix:
	# version: ["3.7", "3.8", "3.9", "3.10", "3.11"]
	version: ["3.11"]

	steps:
	- name: Check out code
	uses: actions/checkout@v3

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.version }}

	- name: Install requirements
	run: \|
	pip install -r requirements.txt
	pip install -r tests/requirements.txt

	- name: Install app
	run: pip install .

	# - name: Lint with Flake8
	# run: flake8 --max-line-length=120 .

	# - name: Run unit tests
	# run: \|
	# pytest \
	# --cov=tes/ \
	# --cov-branch \
	# --cov-report=term-missing \
	# --cov-fail-under=99

	- name: Test with Funnel
	run: \|
	/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/ohsu-comp-bio/funnel/develop/install.sh)" -- 0.11.0-rc.4
	./funnel server --LocalStorage.AllowedDirs $HOME run &
	pytest tests/integration

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