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Merge pull request #635 from oborel/issue-631-bis
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obsoleted causal relations, changed labels, def, fixes #631
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@cmungall
cmungall committed Oct 21, 2022
2 parents eec8cb7 + 7727a06 commit 3d604c0
Showing 1 changed file with 27 additions and 31 deletions.
58 changes: 27 additions & 31 deletions src/ontology/ro-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -3601,44 +3601,40 @@ SubObjectPropertyOf(obo:RO_0002405 obo:RO_0002087)
SubObjectPropertyOf(obo:RO_0002405 obo:RO_0002404)
InverseObjectProperties(obo:RO_0002405 obo:RO_0002412)

# Object Property: obo:RO_0002406 (directly activates)
# Object Property: obo:RO_0002406 (obsolete directly activates)

AnnotationAssertion(obo:IAO_0000114 obo:RO_0002406 obo:IAO_0000428)
AnnotationAssertion(obo:IAO_0000115 obo:RO_0002406 "p directly activates q if and only if p is immediately upstream of q and p is the realization of a function to increase the rate or activity of q")
AnnotationAssertion(obo:IAO_0000117 obo:RO_0002406 "Chris Mungall")
AnnotationAssertion(obo:IAO_0000118 obo:RO_0002406 "directly positively regulates")
AnnotationAssertion(obo:IAO_0000119 obo:RO_0002406 <http://purl.obolibrary.org/obo/ro/docs/causal-relations>)
AnnotationAssertion(obo:IAO_0000589 obo:RO_0002406 "directly activates (process to process)")
AnnotationAssertion(rdfs:label obo:RO_0002406 "directly activates"@en)
SubObjectPropertyOf(obo:RO_0002406 obo:RO_0002629)
AnnotationAssertion(rdfs:comment obo:RO_0002406 "This term was obsoleted because it has the same meaning as 'directly positively regulates'."^^xsd:string)
AnnotationAssertion(rdfs:label obo:RO_0002406 "obsolete directly activates"@en)
AnnotationAssertion(obo:IAO_0100001 obo:RO_0002406 obo:RO_0002629)
AnnotationAssertion(owl:deprecated obo:RO_0002406 "true"^^xsd:boolean)

# Object Property: obo:RO_0002407 (indirectly activates)
# Object Property: obo:RO_0002407 (indirectly positively regulates)

AnnotationAssertion(obo:IAO_0000115 obo:RO_0002407 "p indirectly activates q if and only if p is upstream of q and there is a chain of directly activates relationships connecting p and q, where the chain is of length greater than one.")
AnnotationAssertion(obo:IAO_0000115 obo:RO_0002407 "p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q.")
AnnotationAssertion(obo:IAO_0000117 obo:RO_0002407 "Chris Mungall")
AnnotationAssertion(obo:IAO_0000118 obo:RO_0002407 "indirectly positively regulates")
AnnotationAssertion(obo:IAO_0000118 obo:RO_0002407 "indirectly activates")
AnnotationAssertion(obo:RO_0002579 obo:RO_0002407 obo:RO_0002213)
AnnotationAssertion(rdfs:label obo:RO_0002407 "indirectly activates"@en)
AnnotationAssertion(rdfs:label obo:RO_0002407 "indirectly positively regulates"@en)
SubObjectPropertyOf(obo:RO_0002407 obo:RO_0002213)
SubObjectPropertyOf(obo:RO_0002407 obo:RO_0012012)
TransitiveObjectProperty(obo:RO_0002407)

# Object Property: obo:RO_0002408 (directly inhibits)
# Object Property: obo:RO_0002408 (obsolete directly inhibits)

AnnotationAssertion(obo:IAO_0000117 obo:RO_0002408 "Chris Mungall")
AnnotationAssertion(obo:IAO_0000118 obo:RO_0002408 "directly negatively regulates")
AnnotationAssertion(obo:IAO_0000119 obo:RO_0002408 <http://purl.obolibrary.org/obo/ro/docs/causal-relations>)
AnnotationAssertion(obo:IAO_0000589 obo:RO_0002408 "directly inhibits (process to process)")
AnnotationAssertion(rdfs:label obo:RO_0002408 "directly inhibits"@en)
SubObjectPropertyOf(obo:RO_0002408 obo:RO_0002630)
AnnotationAssertion(rdfs:comment obo:RO_0002408 "This term was obsoleted because it has the same meaning as 'directly negatively regulates'."^^xsd:string)
AnnotationAssertion(rdfs:label obo:RO_0002408 "obsolete directly inhibits"@en)
AnnotationAssertion(obo:IAO_0100001 obo:RO_0002408 obo:RO_0002630)
AnnotationAssertion(owl:deprecated obo:RO_0002408 "true"^^xsd:boolean)

# Object Property: obo:RO_0002409 (indirectly inhibits)
# Object Property: obo:RO_0002409 (indirectly negatively regulates)

AnnotationAssertion(obo:IAO_0000114 obo:RO_0002409 obo:IAO_0000428)
AnnotationAssertion(obo:IAO_0000115 obo:RO_0002409 "p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q.")
AnnotationAssertion(obo:IAO_0000117 obo:RO_0002409 "Chris Mungall")
AnnotationAssertion(obo:IAO_0000118 obo:RO_0002409 "indirectly negatively regulates")
AnnotationAssertion(obo:IAO_0000118 obo:RO_0002409 "indirectly inhibits")
AnnotationAssertion(obo:RO_0002579 obo:RO_0002409 obo:RO_0002212)
AnnotationAssertion(rdfs:label obo:RO_0002409 "indirectly inhibits"@en)
AnnotationAssertion(rdfs:label obo:RO_0002409 "indirectly negatively regulates"@en)
SubObjectPropertyOf(obo:RO_0002409 obo:RO_0002212)
SubObjectPropertyOf(obo:RO_0002409 obo:RO_0012012)
TransitiveObjectProperty(obo:RO_0002409)

# Object Property: obo:RO_0002410 (causally related to)
Expand Down Expand Up @@ -6692,13 +6688,9 @@ SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002339 obo:BFO_0000050) obo:RO_0
SubObjectPropertyOf(Annotation(obo:RO_0002582 "true"^^xsd:boolean) ObjectPropertyChain(obo:RO_0002371 obo:BFO_0000050) obo:RO_0002177)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002377 obo:RO_0002381) obo:RO_0002380)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002402 obo:RO_0002400) obo:RO_0002413)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002406 obo:RO_0002406) obo:RO_0002407)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002406 obo:RO_0002407) obo:RO_0002407)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002407 obo:RO_0002406) obo:RO_0002407)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002408 obo:RO_0002408) obo:RO_0002409)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002408 obo:RO_0002409) obo:RO_0002409)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002409 obo:RO_0002408) obo:RO_0002409)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002407 obo:RO_0002629) obo:RO_0002407)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002409 obo:RO_0002409) obo:RO_0002407)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002409 obo:RO_0002630) obo:RO_0002409)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002411 obo:RO_0002402) obo:RO_0002403)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002444 obo:RO_0002444) obo:RO_0002553)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002445 obo:RO_0002445) obo:RO_0002554)
Expand All @@ -6724,6 +6716,10 @@ SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002583 obo:BFO_0000050) obo:RO_0
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002583 obo:BFO_0000062 ObjectInverseOf(obo:RO_0002583)) obo:RO_0002496)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002593 obo:BFO_0000050) obo:RO_0002492)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002593 obo:BFO_0000063 ObjectInverseOf(obo:RO_0002593)) obo:RO_0002497)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002629 obo:RO_0002407) obo:RO_0002407)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002629 obo:RO_0002629) obo:RO_0002407)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002630 obo:RO_0002409) obo:RO_0002409)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002630 obo:RO_0002630) obo:RO_0002409)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0004024 obo:BFO_0000050) obo:RO_0004024)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0004025 obo:BFO_0000050) obo:RO_0004025)
SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0004025 obo:RO_0002215) obo:RO_0004024)
Expand Down Expand Up @@ -6768,4 +6764,4 @@ AnnotationAssertion(oboInOwl:inSubset obo:RO_0002086 subsets:ro-eco)
AnnotationAssertion(oboInOwl:inSubset obo:RO_0002089 subsets:ro-eco)
AnnotationAssertion(oboInOwl:inSubset obo:RO_0002093 subsets:ro-eco)
AnnotationAssertion(Annotation(rdfs:comment "This is an experimental annotation") obo:IAO_0000589 rdfs:isDefinedBy "is defined by")
)
)

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