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2023-08-18 Release (#749)
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* 20230816 release

* rename term namespace

* update release

* revert renaming terms namespace

* revert COB_import update

* fix title

* 20230818 release

---------

Co-authored-by: Anita Caron <[email protected]>
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Anita Caron and anitacaron authored Aug 18, 2023
1 parent 5cb242b commit 39bfebe
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Showing 82 changed files with 3,187 additions and 3,307 deletions.
10 changes: 5 additions & 5 deletions core.json
Original file line number Diff line number Diff line change
Expand Up @@ -3,16 +3,16 @@
"id" : "http://purl.obolibrary.org/obo/ro/core.json",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/elements/1.1/license",
"pred" : "http://purl.org/dc/terms/license",
"val" : "https://creativecommons.org/publicdomain/zero/1.0/"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2023-06-28"
"val" : "2023-08-18"
}, {
"pred" : "http://xmlns.com/foaf/0.1/homepage",
"val" : "https://github.com/oborel/obo-relations/wiki/ROCore"
} ],
"version" : "http://purl.obolibrary.org/obo/ro/releases/2023-06-28/core.json"
"version" : "http://purl.obolibrary.org/obo/ro/releases/2023-08-18/core.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/BFO_0000002",
Expand Down Expand Up @@ -406,7 +406,7 @@
"pred" : "http://purl.obolibrary.org/obo/IAO_0000118",
"val" : "has_participant"
}, {
"pred" : "http://purl.org/dc/elements/1.1/source",
"pred" : "http://purl.org/dc/terms/source",
"val" : "http://www.obofoundry.org/ro/#OBO_REL:has_participant"
} ]
}
Expand Down Expand Up @@ -692,7 +692,7 @@
"pred" : "http://purl.obolibrary.org/obo/RO_0001900",
"val" : "http://purl.obolibrary.org/obo/RO_0001901"
}, {
"pred" : "http://purl.org/dc/elements/1.1/source",
"pred" : "http://purl.org/dc/terms/source",
"val" : "http://www.obofoundry.org/ro/#OBO_REL:located_in"
} ]
}
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10 changes: 5 additions & 5 deletions core.obo
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@@ -1,9 +1,9 @@
format-version: 1.2
data-version: ro/releases/2023-06-28/core.owl
data-version: ro/releases/2023-08-18/core.owl
ontology: ro/core
property_value: http://purl.org/dc/elements/1.1/license https://creativecommons.org/publicdomain/zero/1.0/
property_value: http://purl.org/dc/terms/license https://creativecommons.org/publicdomain/zero/1.0/
property_value: http://xmlns.com/foaf/0.1/homepage "https://github.com/oborel/obo-relations/wiki/ROCore" xsd:anyURI
property_value: owl:versionInfo "2023-06-28" xsd:string
property_value: owl:versionInfo "2023-08-18" xsd:string

[Term]
id: BFO:0000002
Expand Down Expand Up @@ -222,7 +222,7 @@ inverse_of: RO:0000057 ! has participant
id: RO:0000057
name: has participant
def: "a relation between a process and a continuant, in which the continuant is somehow involved in the process" []
property_value: http://purl.org/dc/elements/1.1/source "http://www.obofoundry.org/ro/#OBO_REL:has_participant" xsd:string
property_value: http://purl.org/dc/terms/source "http://www.obofoundry.org/ro/#OBO_REL:has_participant" xsd:string
property_value: IAO:0000111 "has participant" xsd:string
property_value: IAO:0000112 "this blood coagulation has participant this blood clot" xsd:string
property_value: IAO:0000112 "this investigation has participant this investigator" xsd:string
Expand Down Expand Up @@ -373,7 +373,7 @@ inverse_of: RO:0001025 ! located in
id: RO:0001025
name: located in
def: "a relation between two independent continuants, the target and the location, in which the target is entirely within the location" []
property_value: http://purl.org/dc/elements/1.1/source "http://www.obofoundry.org/ro/#OBO_REL:located_in" xsd:string
property_value: http://purl.org/dc/terms/source "http://www.obofoundry.org/ro/#OBO_REL:located_in" xsd:string
property_value: IAO:0000111 "located in" xsd:string
property_value: IAO:0000112 "my brain is located in my head" xsd:string
property_value: IAO:0000112 "this rat is located in this cage" xsd:string
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28 changes: 11 additions & 17 deletions core.owl
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@@ -1,7 +1,6 @@
<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/ro/core.owl#"
xml:base="http://purl.obolibrary.org/obo/ro/core.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
Expand All @@ -11,11 +10,12 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:swrl="http://www.w3.org/2003/11/swrl#"
xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
xmlns:terms="http://purl.org/dc/terms/">
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ro/core.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2023-06-28/core.owl"/>
<dc:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
<owl:versionInfo>2023-06-28</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2023-08-18/core.owl"/>
<terms:license rdf:resource="https://creativecommons.org/publicdomain/zero/1.0/"/>
<owl:versionInfo>2023-08-18</owl:versionInfo>
<foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/oborel/obo-relations/wiki/ROCore</foaf:homepage>
</owl:Ontology>

Expand Down Expand Up @@ -86,21 +86,15 @@



<!-- http://purl.org/dc/elements/1.1/license -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/license"/>



<!-- http://purl.org/dc/elements/1.1/source -->
<!-- http://purl.org/dc/terms/license -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/source"/>
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>



<!-- http://purl.org/dc/terms/license -->
<!-- http://purl.org/dc/terms/source -->

<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/source"/>



Expand Down Expand Up @@ -304,7 +298,7 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<obo:IAO_0000115 xml:lang="en">a relation between a process and a continuant, in which the continuant is somehow involved in the process</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_participant</obo:IAO_0000118>
<dc:source>http://www.obofoundry.org/ro/#OBO_REL:has_participant</dc:source>
<terms:source>http://www.obofoundry.org/ro/#OBO_REL:has_participant</terms:source>
<rdfs:label xml:lang="en">has participant</rdfs:label>
</owl:ObjectProperty>

Expand Down Expand Up @@ -533,7 +527,7 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<obo:IAO_0000116 xml:lang="en">Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">located_in</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<dc:source>http://www.obofoundry.org/ro/#OBO_REL:located_in</dc:source>
<terms:source>http://www.obofoundry.org/ro/#OBO_REL:located_in</terms:source>
<rdfs:label xml:lang="en">located in</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
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