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Merge pull request #165 from obophenotype/release18042024
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Update all release files (18 April 2024)
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matentzn authored Apr 21, 2024
2 parents f18ac7d + 76a9132 commit b7d3a44
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Showing 18 changed files with 1,561,788 additions and 1,136,324 deletions.
102,714 changes: 51,357 additions & 51,357 deletions patterns/definitions.owl

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382 changes: 103 additions & 279 deletions src/ontology/imports/bfo_import.owl

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196 changes: 57 additions & 139 deletions src/ontology/imports/chebi_import.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/xpo/imports/chebi_import.owl#"
xml:base="http://purl.obolibrary.org/obo/xpo/imports/chebi_import.owl"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:chebi="http://purl.obolibrary.org/obo/chebi#3"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/xpo/imports/chebi_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/xpo/releases/2022-09-15/imports/chebi_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-09-15</owl:versionInfo>
</owl:Ontology>

Prefix(:=<http://purl.obolibrary.org/obo/xpo/imports/chebi_import.owl#>)
Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
Prefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)
Prefix(xml:=<http://www.w3.org/XML/1998/namespace>)
Prefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)
Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
Ontology(<http://purl.obolibrary.org/obo/xpo/imports/chebi_import.owl>
<http://purl.obolibrary.org/obo/xpo/releases/2024-04-18/imports/chebi_import.owl>
Annotation(owl:versionInfo "2024-04-18")


Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_24431>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000051>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0100001>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/chebi#3_STAR>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#SubsetProperty>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#date>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#default-namespace>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasDbXref>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#id>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#inSubset>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#is_cyclic>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#saved-by>))
Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#shorthand>))
############################
# Annotation Properties
############################

# Annotation Property: <http://purl.obolibrary.org/obo/IAO_0000115> (definition)

<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000115> "definition")

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<rdfs:label>definition</rdfs:label>
</owl:AnnotationProperty>

# Annotation Property: <http://purl.obolibrary.org/obo/chebi#3_STAR> (<http://purl.obolibrary.org/obo/chebi#3_STAR>)

SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/chebi#3_STAR> <http://www.geneontology.org/formats/oboInOwl#SubsetProperty>)

<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
# Annotation Property: <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> (has_exact_synonym)

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001"/>

AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> "has_exact_synonym")


<!-- http://purl.obolibrary.org/obo/chebi#3_STAR -->
############################
# Object Properties
############################

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/chebi#3_STAR">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>

# Object Property: <http://purl.obolibrary.org/obo/BFO_0000051> (has part)

AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/BFO_0000051> "BFO:0000051")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/BFO_0000051> "chebi_ontology")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/BFO_0000051> "has_part")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#is_cyclic> <http://purl.obolibrary.org/obo/BFO_0000051> "false"^^xsd:boolean)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#shorthand> <http://purl.obolibrary.org/obo/BFO_0000051> "has_part")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/BFO_0000051> "has part")
TransitiveObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000051>)

<!-- http://www.geneontology.org/formats/oboInOwl#SubsetProperty -->

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>


############################
# Classes
############################

<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
# Class: <http://purl.obolibrary.org/obo/CHEBI_24431> (chemical entity)

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/>

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CHEBI_24431> "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "UniProt") <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/CHEBI_24431> "chemical entity")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CHEBI_24431> "chebi_ontology")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/CHEBI_24431> "CHEBI:24431")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_24431> <http://purl.obolibrary.org/obo/chebi#3_STAR>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_24431> "chemical entity")


<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
<rdfs:label>has_exact_synonym</rdfs:label>
</owl:AnnotationProperty>



<!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace -->

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"/>



<!-- http://www.geneontology.org/formats/oboInOwl#id -->

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>



<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"/>



<!-- http://www.geneontology.org/formats/oboInOwl#is_cyclic -->

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#is_cyclic"/>



<!-- http://www.geneontology.org/formats/oboInOwl#shorthand -->

<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand"/>



<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->




<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<oboInOwl:hasDbXref>BFO:0000051</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>chebi_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>has_part</oboInOwl:id>
<oboInOwl:is_cyclic rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">false</oboInOwl:is_cyclic>
<oboInOwl:shorthand>has_part</oboInOwl:shorthand>
<rdfs:label>has part</rdfs:label>
</owl:ObjectProperty>



<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->




<!-- http://purl.obolibrary.org/obo/CHEBI_24431 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/CHEBI_24431">
<obo:IAO_0000115>A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.</obo:IAO_0000115>
<oboInOwl:hasExactSynonym>chemical entity</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace>chebi_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:id>CHEBI:24431</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/chebi#3_STAR"/>
<rdfs:label>chemical entity</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/CHEBI_24431"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
<owl:annotatedTarget>chemical entity</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">UniProt</oboInOwl:hasDbXref>
</owl:Axiom>
</rdf:RDF>



<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->

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