Merge pull request #2901 from obophenotype/new-release-2023-05

Release 2023-05-23
obophenotype · May 23, 2023 · e4f7474 · e4f7474
2 parents 03461a9 + 4575e81
commit e4f7474
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diff --git a/src/ontology/bridge/cl-bridge-to-aao.obo b/src/ontology/bridge/cl-bridge-to-aao.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-aao
-data-version: 2023-04-19
+data-version: 2023-05-23
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to aao" xsd:string
 property_value: dc-description "Equivalence axioms between AAO and CL. Note that AAO is in the process of being merged into the core CL, so this mapping will become deprecated" xsd:string

diff --git a/src/ontology/bridge/cl-bridge-to-aao.owl b/src/ontology/bridge/cl-bridge-to-aao.owl
@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2023-04-19/uberon/bridge/cl-bridge-to-aao.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aao/2023-05-23/uberon/bridge/cl-bridge-to-aao.owl"/>
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Erik Segerdell</dc:contributor>
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Paula Mabee</dc:contributor>
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>

diff --git a/src/ontology/bridge/cl-bridge-to-aeo.obo b/src/ontology/bridge/cl-bridge-to-aeo.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-aeo
-data-version: 2023-04-19
+data-version: 2023-05-23
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/src/ontology/bridge/cl-bridge-to-aeo.owl b/src/ontology/bridge/cl-bridge-to-aeo.owl
@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aeo.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aeo/2023-04-19/uberon/bridge/cl-bridge-to-aeo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-aeo/2023-05-23/uberon/bridge/cl-bridge-to-aeo.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

diff --git a/src/ontology/bridge/cl-bridge-to-bila.obo b/src/ontology/bridge/cl-bridge-to-bila.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-bila
-data-version: 2023-04-19
+data-version: 2023-05-23
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/src/ontology/bridge/cl-bridge-to-bila.owl b/src/ontology/bridge/cl-bridge-to-bila.owl
@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2023-04-19/uberon/bridge/cl-bridge-to-bila.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bila/2023-05-23/uberon/bridge/cl-bridge-to-bila.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

diff --git a/src/ontology/bridge/cl-bridge-to-bspo.obo b/src/ontology/bridge/cl-bridge-to-bspo.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-bspo
-data-version: 2023-04-19
+data-version: 2023-05-23
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/src/ontology/bridge/cl-bridge-to-bspo.owl b/src/ontology/bridge/cl-bridge-to-bspo.owl
@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2023-04-19/uberon/bridge/cl-bridge-to-bspo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-bspo/2023-05-23/uberon/bridge/cl-bridge-to-bspo.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

diff --git a/src/ontology/bridge/cl-bridge-to-caro.obo b/src/ontology/bridge/cl-bridge-to-caro.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-caro
-data-version: 2023-04-19
+data-version: 2023-05-23
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/src/ontology/bridge/cl-bridge-to-caro.owl b/src/ontology/bridge/cl-bridge-to-caro.owl
@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2023-04-19/uberon/bridge/cl-bridge-to-caro.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-caro/2023-05-23/uberon/bridge/cl-bridge-to-caro.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

diff --git a/src/ontology/bridge/cl-bridge-to-dhba.obo b/src/ontology/bridge/cl-bridge-to-dhba.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-dhba
-data-version: 2023-04-19
+data-version: 2023-05-23
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/src/ontology/bridge/cl-bridge-to-dhba.owl b/src/ontology/bridge/cl-bridge-to-dhba.owl
@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-dhba.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-dhba/2023-04-19/uberon/bridge/cl-bridge-to-dhba.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-dhba/2023-05-23/uberon/bridge/cl-bridge-to-dhba.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

diff --git a/src/ontology/bridge/cl-bridge-to-efo.obo b/src/ontology/bridge/cl-bridge-to-efo.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-efo
-data-version: 2023-04-19
+data-version: 2023-05-23
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/src/ontology/bridge/cl-bridge-to-efo.owl b/src/ontology/bridge/cl-bridge-to-efo.owl
@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-efo.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-efo/2023-04-19/uberon/bridge/cl-bridge-to-efo.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-efo/2023-05-23/uberon/bridge/cl-bridge-to-efo.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa.obo b/src/ontology/bridge/cl-bridge-to-ehdaa.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ehdaa
-data-version: 2023-04-19
+data-version: 2023-05-23
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Typedef]

diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa.owl b/src/ontology/bridge/cl-bridge-to-ehdaa.owl
@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2023-04-19/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa/2023-05-23/uberon/bridge/cl-bridge-to-ehdaa.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa2.obo b/src/ontology/bridge/cl-bridge-to-ehdaa2.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ehdaa2
-data-version: 2023-04-19
+data-version: 2023-05-23
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to ehdaa2" xsd:string
 property_value: dc-description "Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA" xsd:string

diff --git a/src/ontology/bridge/cl-bridge-to-ehdaa2.owl b/src/ontology/bridge/cl-bridge-to-ehdaa2.owl
@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2023-04-19/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ehdaa2/2023-05-23/uberon/bridge/cl-bridge-to-ehdaa2.owl"/>
         <dc:contributor rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Jonathan Bard</dc:contributor>
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>
         <dc:description rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Equivalence axioms between EHDAA2 and CL. EHDAA2 replaces EHDAA</dc:description>

diff --git a/src/ontology/bridge/cl-bridge-to-emapa.obo b/src/ontology/bridge/cl-bridge-to-emapa.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-emapa
-data-version: 2023-04-19
+data-version: 2023-05-23
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to emapa" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between EMAPA (abstract developmental mouse) and CL" xsd:string

diff --git a/src/ontology/bridge/cl-bridge-to-emapa.owl b/src/ontology/bridge/cl-bridge-to-emapa.owl
@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2023-04-19/uberon/bridge/cl-bridge-to-emapa.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-emapa/2023-05-23/uberon/bridge/cl-bridge-to-emapa.owl"/>
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Anne Niknejad</dc:creator>
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Aurelie Comte</dc:creator>
         <dc:creator rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL editors</dc:creator>

diff --git a/src/ontology/bridge/cl-bridge-to-ev.obo b/src/ontology/bridge/cl-bridge-to-ev.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-ev
-data-version: 2023-04-19
+data-version: 2023-05-23
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 
 [Term]

diff --git a/src/ontology/bridge/cl-bridge-to-ev.owl b/src/ontology/bridge/cl-bridge-to-ev.owl
@@ -13,7 +13,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ev.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ev/2023-04-19/uberon/bridge/cl-bridge-to-ev.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/uberon/bridge/cl-bridge-to-ev/2023-05-23/uberon/bridge/cl-bridge-to-ev.owl"/>
         <rdfs:seeAlso rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://purl.obolibrary.org/obo/uberon/references/reference_0000026</rdfs:seeAlso>
     </owl:Ontology>
 

diff --git a/src/ontology/bridge/cl-bridge-to-fbbt.obo b/src/ontology/bridge/cl-bridge-to-fbbt.obo
@@ -1,5 +1,5 @@
 ontology: uberon/bridge/cl-bridge-to-fbbt
-data-version: 2023-04-19
+data-version: 2023-05-23
 property_value: seeAlso "http://purl.obolibrary.org/obo/uberon/references/reference_0000026" xsd:anyURI
 property_value: dc-title "CL bridge to fbbt" xsd:string
 property_value: dc-description "Taxonomic equivalence axioms between the drosophila anatomy ontology and CL. Note that currently CL focuses on chordate anatomy so there are only a minimal set of equivalencies for high level classes. In future CL may bridge via the arthropod anatomy ontology" xsd:string
@@ -14,6 +14,18 @@ property_value: IAO:0000589 "cell (drosophila)" xsd:string
 intersection_of: CL:0000000 ! cell
 intersection_of: part_of NCBITaxon:7227
 
+[Term]
+id: FBbt:00004861 ! 
+property_value: IAO:0000589 "germ line stem cell (drosophila)" xsd:string
+intersection_of: CL:0000014 ! germ line stem cell
+intersection_of: part_of NCBITaxon:7227
+
+[Term]
+id: FBbt:00004929 ! 
+property_value: IAO:0000589 "male germ line stem cell (drosophila)" xsd:string
+intersection_of: CL:0000016 ! male germ line stem cell
+intersection_of: part_of NCBITaxon:7227
+
 [Term]
 id: FBbt:00004936 ! 
 property_value: IAO:0000589 "spermatocyte (drosophila)" xsd:string
@@ -80,18 +92,6 @@ property_value: IAO:0000589 "epithelial cell (drosophila)" xsd:string
 intersection_of: CL:0000066 ! epithelial cell
 intersection_of: part_of NCBITaxon:7227
 
-[Term]
-id: FBbt:00004861 ! 
-property_value: IAO:0000589 "germ line stem cell (sensu Nematoda and Protostomia) (drosophila)" xsd:string
-intersection_of: CL:0000086 ! germ line stem cell (sensu Nematoda and Protostomia)
-intersection_of: part_of NCBITaxon:7227
-
-[Term]
-id: FBbt:00004929 ! 
-property_value: IAO:0000589 "male germ line stem cell (sensu Nematoda and Protostomia) (drosophila)" xsd:string
-intersection_of: CL:0000087 ! male germ line stem cell (sensu Nematoda and Protostomia)
-intersection_of: part_of NCBITaxon:7227
-
 [Term]
 id: FBbt:00005125 ! 
 property_value: IAO:0000589 "interneuron (drosophila)" xsd:string
@@ -148,8 +148,8 @@ intersection_of: part_of NCBITaxon:7227
 
 [Term]
 id: FBbt:00003360 ! 
-property_value: IAO:0000589 "flight muscle cell (drosophila)" xsd:string
-intersection_of: CL:0000196 ! flight muscle cell
+property_value: IAO:0000589 "insect flight muscle cell (drosophila)" xsd:string
+intersection_of: CL:0000196 ! insect flight muscle cell
 intersection_of: part_of NCBITaxon:7227
 
 [Term]
@@ -164,12 +164,6 @@ property_value: IAO:0000589 "pole cell (drosophila)" xsd:string
 intersection_of: CL:0000301 ! pole cell
 intersection_of: part_of NCBITaxon:7227
 
-[Term]
-id: FBbt:00005038 ! 
-property_value: IAO:0000589 "tracheal epithelial cell (drosophila)" xsd:string
-intersection_of: CL:0000307 ! tracheal epithelial cell
-intersection_of: part_of NCBITaxon:7227
-
 [Term]
 id: FBbt:00005146 ! 
 property_value: IAO:0000589 "neuroblast (sensu Nematoda and Protostomia) (drosophila)" xsd:string
@@ -244,14 +238,8 @@ intersection_of: part_of NCBITaxon:7227
 
 [Term]
 id: FBbt:00001691 ! 
-property_value: IAO:0000589 "polygonal cell (drosophila)" xsd:string
-intersection_of: CL:0000398 ! polygonal cell
-intersection_of: part_of NCBITaxon:7227
-
-[Term]
-id: FBbt:00005148 ! 
-property_value: IAO:0000589 "neuroepidermoblast (drosophila)" xsd:string
-intersection_of: CL:0000405 ! neuroepidermoblast
+property_value: IAO:0000589 "obsolete polygonal cell (drosophila)" xsd:string
+intersection_of: CL:0000398 ! obsolete polygonal cell
 intersection_of: part_of NCBITaxon:7227
 
 [Term]
@@ -440,6 +428,12 @@ property_value: IAO:0000589 "visceral muscle cell (drosophila)" xsd:string
 intersection_of: CL:0008007 ! visceral muscle cell
 intersection_of: part_of NCBITaxon:7227
 
+[Term]
+id: FBbt:00005038 ! 
+property_value: IAO:0000589 "open tracheal system tracheocyte (drosophila)" xsd:string
+intersection_of: CL:0008026 ! open tracheal system tracheocyte
+intersection_of: part_of NCBITaxon:7227
+
 [Term]
 id: FBbt:00007367 ! 
 property_value: IAO:0000589 "histaminergic neuron (drosophila)" xsd:string