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Remap ZFA's 'coelom'.
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ZFA's 'coelom' (ZFA:0001438) is mapped to Uberon's 'coelemic cavity
lumen' (UBERON:0002323).

This is incorrect as the ZFA terms refers to a multi-tissue structure
and therefore to a material entity, whereas the Uberon term refers to
the anatomical cavity *within* the coelom (an immaterial entity).

Uberon has another term to refer to the (material) anatomical structure
that forms the coelemic cavity: 'coelom' (UBERON:0011997), the ZFA term
should be mapped to that term instead.

partially addresses #3353
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gouttegd committed Sep 12, 2024
1 parent a1cdbb6 commit b854f7d
Showing 1 changed file with 1 addition and 2 deletions.
3 changes: 1 addition & 2 deletions src/ontology/uberon-edit.obo
Original file line number Diff line number Diff line change
Expand Up @@ -47474,11 +47474,9 @@ xref: RETIRED_EHDAA2:0003186
xref: SCTID:361348008
xref: TAO:0001438
xref: UMLS:C0333343 {source="ncithesaurus:Cavity"}
xref: ZFA:0001438
is_a: UBERON:0002553 ! anatomical cavity
relationship: luminal_space_of UBERON:0011997 ! coelom
relationship: transformation_of UBERON:0003886 {evidence="definitional"} ! future coelemic cavity lumen
property_value: external_definition "Anatomical space, part of the trunk that contains the pericardial and pleuroperitoneal cavities[ZFA]." xsd:string {date_retrieved="2012-09-12", external_class="ZFA:0001438", ontology="ZFA", source="ZFIN:curator"}
property_value: external_definition "The cavity within the body of all animals higher than the coelenterates and certain primitive worms, formed by the splitting of the embryonic mesoderm into two layers. In mammals it forms the peritoneal, pleural, and pericardial cavities[BTO]." xsd:string {date_retrieved="2012-09-12", external_class="BTO:0001707", ontology="BTO", source="BTO"}
property_value: taxon_notes "In mammals it forms the peritoneal, pleural, and pericardial cavities" xsd:string

Expand Down Expand Up @@ -149787,6 +149785,7 @@ synonym: "haemocoelom" NARROW []
synonym: "schizocoelom" NARROW []
xref: EHDAA2:0004731
xref: Wikipedia:Coelom
xref: ZFA:0001438
is_a: UBERON:0000481 {source="EHDAA2"} ! multi-tissue structure
relationship: in_taxon NCBITaxon:33213 ! Bilateria
relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} ! Acoelomorpha
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